# TBK1 activity regulates the directionality of axonal transport of signalling endosomes

**Authors:** David Villarroel-Campos, Jose Norberto S Vargas, Martin Wallace, Kai Sun, James N Sleigh, Pietro Fratta, Giampietro Schiavo

PMC · DOI: 10.26508/lsa.202503527 · 2026-02-04

## TL;DR

This study shows that the TBK1 kinase controls the one-way movement of signaling endosomes in neurons, which is crucial for nerve cell survival and may be disrupted in ALS.

## Contribution

The paper identifies TBK1 as a novel regulator of unidirectional signaling endosome transport via Rab7 phosphorylation.

## Key findings

- TBK1 phosphorylates Rab7 at S72, affecting its binding to dynein adaptors.
- TBK1 knockdown or Rab7 S72E mutation causes bidirectional movement of signaling endosomes.
- Transport of lysosomes and mitochondria remains unaffected by these changes.

## Abstract

Neurotrophin-containing signalling endosomes travel from the distal axon to the soma. ALS-linked kinase TBK1 governs the directionality of their transport in motor neurons by phosphorylating Rab7.

The polarised and complex morphology of neurons poses massive challenges for efficient cargo delivery between the axon and soma, a process termed axonal transport. We have previously shown that the retrograde axonal transport of pro-survival, neurotrophic signalling endosomes relies on Rab7 in motor neurons, and that their trafficking is impaired in the early stages of amyotrophic lateral sclerosis (ALS) pathogenesis. Here, we report the effect of Rab7 phosphorylation on the transport of these signalling endosomes. We show that the ALS-linked kinase TBK1 phosphorylates Rab7 at S72 in neurons, altering its binding to cytoplasmic dynein adaptors. Accordingly, both TBK1 knockdown and the expression of a loss-of-function Rab7 mutant (S72E) induce aberrant bidirectional movement of signalling endosomes without modifying neuronal polarity or endosomal sorting. This alteration is specific for signalling endosomes, as axonal transport of lysosomes and mitochondria remains unaffected. We have therefore discovered a new TBK1 function that ensures the unidirectional transport of signalling endosomes, suggesting that reduced TBK1 activity determines retrograde transport dysfunctions and long-range signalling impairments.

## Linked entities

- **Genes:** TBK1 (TANK binding kinase 1) [NCBI Gene 29110], RAB7A (RAB7A, member RAS oncogene family) [NCBI Gene 7879]
- **Proteins:** TBK1 (TANK binding kinase 1), RAB7A (RAB7A, member RAS oncogene family)
- **Diseases:** amyotrophic lateral sclerosis (MONDO:0004976), ALS (MONDO:0004976)

## Full-text entities

- **Genes:** C9orf72 (C9orf72-SMCR8 complex subunit) [NCBI Gene 203228] {aka ALSFTD, DENND9, DENNL72, FTDALS, FTDALS1}, TARDBP (TAR DNA binding protein) [NCBI Gene 23435] {aka ALS10, TDP-43}, SPAG9 (sperm associated antigen 9) [NCBI Gene 9043] {aka CT89, HLC-6, HLC4, HLC6, JIP-4, JIP4}, PRRT2 (proline rich transmembrane protein 2) [NCBI Gene 112476] {aka BFIC2, BFIS2, DSPB3, DYT10, EKD1, FICCA}, GDNF (glial cell derived neurotrophic factor) [NCBI Gene 2668] {aka ATF, ATF1, ATF2, HFB1-GDNF, HSCR3}, SNAPIN (SNAP associated protein) [NCBI Gene 23557] {aka BLOC1S7, BLOS7, BORCS3, NEDBAC, SNAPAP}, Egf (epidermal growth factor) [NCBI Gene 13645], IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, Rilp (Rab interacting lysosomal protein) [NCBI Gene 280408] {aka Gm857}, CNTF (ciliary neurotrophic factor) [NCBI Gene 1270] {aka HCNTF}, RILP (Rab interacting lysosomal protein) [NCBI Gene 83547] {aka PP10141}, RAB7 [NCBI Gene 100008682], PRKN (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 5071] {aka AR-JP, LPRS2, PARK2, PDJ}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, GOLGA2 (golgin A2) [NCBI Gene 2801] {aka DEDHMB, GM130}, FSD1 (fibronectin type III and SPRY domain containing 1) [NCBI Gene 79187] {aka GLFND, MIR1}, Rab7 (RAB7, member RAS oncogene family) [NCBI Gene 19349] {aka Rab7a}, ARF6 (ARF GTPase 6) [NCBI Gene 382], Egfr (epidermal growth factor receptor) [NCBI Gene 13649] {aka 9030024J15Rik, Erbb, Errb1, Errp, Wa5, wa-2}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, Kif5b (kinesin family member 5B) [NCBI Gene 16573] {aka Khc, Khcs, Kns1, Ukhc}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, TRAP [NCBI Gene 100187907], Agfg1 (ArfGAP with FG repeats 1) [NCBI Gene 15463] {aka C130049H11Rik, D730048C23Rik, Hrb, RAB, Rip}, HOOK1 (hook microtubule tethering protein 1) [NCBI Gene 51361] {aka HK1}, NTRK2 (neurotrophic receptor tyrosine kinase 2) [NCBI Gene 4915] {aka DEE58, EIEE58, GP145-TrkB, OBHD, TRKB, trk-B}, RAB7A (RAB7A, member RAS oncogene family) [NCBI Gene 7879] {aka CMT2B, PRO2706, RAB7}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, MAP1LC3B (microtubule associated protein 1 light chain 3 beta) [NCBI Gene 81631] {aka ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a}, MAP3K7 (mitogen-activated protein kinase kinase kinase 7) [NCBI Gene 6885] {aka CSCF, FMD2, MEKK7, TAK1, TGF1a}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, LAMP1 (lysosome associated membrane protein 1) [NCBI Gene 3916] {aka CD107a, LAMPA, LGP120}, MAPK8IP3 (mitogen-activated protein kinase 8 interacting protein 3) [NCBI Gene 23162] {aka JIP-3, JIP3, JSAP1, NEDBA, SYD2, syd}, RAB7B (RAB7B, member RAS oncogene family) [NCBI Gene 338382] {aka RAB7}, RAB10 (RAB10, member RAS oncogene family) [NCBI Gene 10890], FLCN (folliculin) [NCBI Gene 201163] {aka BHD, DENND8B, FLCL}, TBC1D15 (TBC1 domain family member 15) [NCBI Gene 64786] {aka RAB7-GAP}, NEK7 (NIMA related kinase 7) [NCBI Gene 140609], RAB8A (RAB8A, member RAS oncogene family) [NCBI Gene 4218] {aka MEL, RAB8}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, Hct (hair constriction) [NCBI Gene 104089], Snapin (SNAP-associated protein) [NCBI Gene 20615] {aka 25kDa, Bloc1s7, Snap25bp, Snapap}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, MAPRE3 (microtubule associated protein RP/EB family member 3) [NCBI Gene 22924] {aka EB3, EBF3, EBF3-S, RP3}, Tbk1 (TANK-binding kinase 1) [NCBI Gene 56480] {aka 1200008B05Rik}, Pten (phosphatase and tensin homolog) [NCBI Gene 19211] {aka 2310035O07Rik, A130070J02Rik, B430203M17Rik, MMAC1, PTENbeta, TEP1}, LRRK1 (leucine rich repeat kinase 1) [NCBI Gene 79705] {aka OSMD, RIPK6, Roco1}, Arl8b (ADP-ribosylation factor-like 8B) [NCBI Gene 67166] {aka 2610313E07Rik, 3100002J04Rik, Arl10c, gie1}, IKBKE (inhibitor of nuclear factor kappa B kinase subunit epsilon) [NCBI Gene 9641] {aka IKK-E, IKK-i, IKKE, IKKI}, Kif5c (kinesin family member 5C) [NCBI Gene 16574] {aka KINN, Khc, NKHC, NKHC2}, LRRK2 (leucine rich repeat kinase 2) [NCBI Gene 120892] {aka AURA17, DARDARIN, PARK8, RIPK7, ROCO2}
- **Diseases:** neurological disorders (MESH:D009461), ALS (MESH:D000690), inflammation (MESH:D007249), breast cancer (MESH:D001943), linked (MESH:C536424), MNs (MESH:D016472)
- **Chemicals:** PVDF (MESH:C024865), ATP (MESH:D000255), EGTA (MESH:D004533), sucrose (MESH:D013395), penicillin (MESH:D010406), GDP (MESH:D006153), Tween-20 (MESH:D011136), NP-40 (MESH:C010615), Triton X-100 (MESH:D017830), beta-glycerophosphate (MESH:C031463), EDTA (MESH:D004492), streptomycin (MESH:D013307), saponin (MESH:D012503), Bis-Tris (MESH:C026272), Poly(I:C) (MESH:D011070), NaCl (MESH:D012965), water (MESH:D014867), CO2 (MESH:D002245), PBS (MESH:D007854), TMRE (MESH:C110932), F) (MESH:D005461), 2-mercaptoethanol (MESH:D008623), DTT (MESH:D004229), LysoTracker (MESH:C493330), BX795 (MESH:C579675), HCl (MESH:D006851), DAPI (MESH:C007293), MRT67307 (MESH:C556458), GlutaMAX (MESH:C054122), sodium deoxycholate (MESH:D003840), PMA (MESH:D013755), GTP (MESH:D006160), sodium dodecyl sulphate (MESH:D012967), glutaraldehyde (MESH:D005976), His6 (MESH:C471213), p (MESH:D010758), glycine (MESH:D005998), Deep Red (-), MgCl2 (MESH:D015636), cysteine (MESH:D003545), TBS (MESH:D013725)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Homo sapiens (human, species) [taxon 9606], Mycoplasma (genus) [taxon 2093], C. elegans [taxon 328850]
- **Mutations:** S72A, T72E, Ser/Thr, S72E, R228H, S72E, E696K, N125I, S72, G2019S, T73E, S72P, S72, C for 30-60
- **Cell lines:** HaCaT — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0038), SJL — Mus musculus (Mouse), Finite cell line (CVCL_5897), Jurkat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_0065), MN — Mus musculus (Mouse), Hybridoma (CVCL_G564), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), 293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), MNs — Mus musculus (Mouse), Hybrid cell line (CVCL_U508), N2a — Mus musculus (Mouse), Mouse neuroblastoma, Cancer cell line (CVCL_0470)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12872394/full.md

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Source: https://tomesphere.com/paper/PMC12872394