# Structure‐Based Discovery of Obeticholic Acid Derivatives as Novel Farnesoid X Receptor Partial Agonists with Improved Selectivity and Reduced Off‐Target Effects

**Authors:** Daniela Passeri, Bruno Cerra, Andrea Carotti, Francesco Greco, Sara Piermarini, Carolina Colliva, Paride Liscio, Francesca De Franco, Luciano Adorini, Mary Ruth Erickson, Roberto Pellicciari, Antimo Gioiello

PMC · DOI: 10.1002/cmdc.202500960 · 2026-02-04

## TL;DR

Scientists designed new versions of a drug that target a liver receptor more safely, reducing side effects like itching.

## Contribution

The study introduces novel obeticholic acid derivatives with improved FXR selectivity and reduced off-target activation.

## Key findings

- Valine derivatives 2 and 16 are metabolically stable FXR modulators with reduced agonist efficacy.
- The compounds do not activate MRGPRX4, reducing the risk of pruritus-related side effects.
- Structure–activity relationships for FXR partial agonism and hX4 binding were elucidated.

## Abstract

The Farnesoid X receptor (FXR) is a bile acid‐activated nuclear receptor that represents an important therapeutic target for gut‐liver diseases and metabolic disorders. Recently, FXR partial agonists have gained attention for their potential to minimize side effects resulting from receptor over‐activation. In this study, we report the design, synthesis, and biological evaluation of novel obeticholic acid (OCA) derivatives as selective FXR modulators. Structural modifications at the C3α position and the side chain of the bile acid scaffold led to the identification of valine derivatives 2 and 16 as metabolically stable and safe FXR modulators with reduced agonist efficacy. Further molecular dynamics simulations revealed that these compounds induce distinct conformational changes within the FXR ligand‐binding domain, consistent with their partial agonist behavior and resulting in moderate modulation of FXR target genes. Unlike OCA, both compounds failed to activate other steroid‐responsive receptors, including MRGPRX4 (hX4), a G‐protein‐coupled receptor implicated in itching in cholestatic patients, supporting their potential as safer FXR modulators with a reduced risk of pruritus‐related side effects. Overall, this study elucidates key structure–activity relationships governing FXR partial agonism and hX4 binding and offers valuable chemical tools for the development of FXR‐targeted therapeutics with improved safety profiles.

Novel obeticholic acid derivatives were designed and synthesized through targeted structural modifications at the C3α position and side chain. Valine analogs act as selective FXR partial agonists with favorable metabolic stability and no cytotoxicity, providing safer chemical tools for developing FXR modulators with reduced side effects such as pruritus.© 2026 WILEY‐VCH GmbH

## Linked entities

- **Genes:** NR1H4 (nuclear receptor subfamily 1 group H member 4) [NCBI Gene 9971], MRGPRX4 (MAS related GPR family member X4) [NCBI Gene 117196]
- **Chemicals:** obeticholic acid (PubChem CID 447715)
- **Diseases:** cholestasis (MONDO:0001751)

## Full-text entities

- **Genes:** ABCB11 (ATP binding cassette subfamily B member 11) [NCBI Gene 8647] {aka ABC16, BRIC2, BSEP, PFIC-2, PFIC2, PGY4}, ADRB2 (adrenoceptor beta 2) [NCBI Gene 154] {aka ADRB2R, ADRBR, ARB2, B2AR, BAR, BETA2AR}, RXRA (retinoid X receptor alpha) [NCBI Gene 6256] {aka NR2B1, RXR-alpha, RXRalpha}, NCOA1 (nuclear receptor coactivator 1) [NCBI Gene 8648] {aka F-SRC-1, KAT13A, RIP160, SRC1, bHLHe42, bHLHe74}, Nr1h4 (nuclear receptor subfamily 1, group H, member 4) [NCBI Gene 20186] {aka Fxr, HRR1, RIP14, Rxrip14}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, CYP7A1 (cytochrome P450 family 7 subfamily A member 1) [NCBI Gene 1581] {aka CP7A, CYP7, CYPVII}, H12 (histocompatibility 12) [NCBI Gene 104201] {aka H-12}, SLC51B (SLC51 subunit beta) [NCBI Gene 123264] {aka OSTB, OSTBETA, PBAM2, SLC51A1BP}, NR1H4 (nuclear receptor subfamily 1 group H member 4) [NCBI Gene 9971] {aka BAR, FXR, HRR-1, HRR1, PFIC5, RIP14}, MRGPRX4 (MAS related GPR family member X4) [NCBI Gene 117196] {aka GPCR, MRGX4, SNSR6}, ADORA2A (adenosine A2a receptor) [NCBI Gene 135] {aka A2aR, ADORA2, RDC8}, CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663] {aka BONZO, CD186, CDw186, STRL33, TYMSTR}, SMN1 (survival of motor neuron 1, telomeric) [NCBI Gene 6606] {aka BCD541, GEMIN1, SMA, SMA1, SMA2, SMA3}
- **Diseases:** PSC (MESH:D015209), Cytotoxicity (MESH:D064420), cholestasis (MESH:D002779), type 2 diabetes (MESH:D003924), PBC (MESH:D008105), hyperlipidemia (MESH:D006949), colorectal adenocarcinoma (MESH:D003110), Pruritus (MESH:D011537), metabolic disorders (MESH:D008659), MASH (MESH:D005234), necrosis (MESH:D009336), cholestatic liver diseases (MESH:D008107)
- **Chemicals:** cesium carbonate (MESH:C545311), carbamate (MESH:D002219), sulfate (MESH:D013431), sulfur (MESH:D013455), carboxylic acid (MESH:D002264), pyridine (MESH:C023666), Bi(OTf)3 (MESH:C445789), MeI (MESH:C035713), 13C (MESH:C000615229), THF (MESH:C018674), NH3 (MESH:D000641), glycine (MESH:D005998), Na2SO4 (MESH:C012036), BAs (MESH:D001464), L-glutamine (MESH:D005973), POPC (MESH:C065191), nBuLi (MESH:C434823), toluene (MESH:D014050), 6-CH2CH (-), maleic acid (MESH:C030272), silica (MESH:D012822), acetonitrile (MESH:C032159), mitiglinide (MESH:C087255), HCl (MESH:D006851), L-leucine (MESH:D007930), ammonium formate (MESH:C030544), ruthenium (MESH:D012428), morpholine (MESH:C037574), glucose (MESH:D005947), cholic acid (MESH:D019826), amino acids (MESH:D000596), amide (MESH:D000577), triethylamine (MESH:C016162), CDCA (MESH:D002635), Dextromethorphan (MESH:D003915), iso-butylamine (MESH:C053521), OCA (MESH:C464660), fatty acid (MESH:D005227), lipid (MESH:D008055), p-TSA (MESH:C041343), pGEM (MESH:C060526), aromatic amino acids (MESH:D024322), L-phenylalanine (MESH:D010649), anthranilamide (MESH:C000219), TFA (MESH:D014269), L-valine (MESH:D014633), 3-isobutyl-1-methylxanthine (MESH:D015056), NaOH (MESH:D012972), H2SO4 (MESH:C033158), dioxane (MESH:C025223), H (MESH:D006859), phosphomolybdic acid (MESH:C003125), L-alanine (MESH:D000409), SYBR Green (MESH:C098022), carbonate (MESH:D002254), brine (MESH:C017082), maleic anhydride (MESH:D008299), HEPES (MESH:D006531), INT-767 (MESH:C000602622), NADPH (MESH:D009249)
- **Species:** Renilla reniformis (sea pansy, species) [taxon 6136], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** CVCL_0214 — Homo sapiens (Human), Finite cell line (CVCL_V756), CVCL_1581 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_B3UV), hamster Chinese — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0212), CCL-61 — Homo sapiens (Human), Neoplasm, Cancer cell line (CVCL_M024), CHO-K1 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0214), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), CD-1 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_5731), CVCL_0027 — Homo sapiens (Human), Transformed cell line (CVCL_K306), CHO — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0213), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), HB-8065 — Homo sapiens (Human), Conditionally immortalized cell line (CVCL_J982), NCI-H716 — Homo sapiens (Human), Cecum adenocarcinoma, Cancer cell line (CVCL_1581), CCL- — Mus musculus (Mouse), Undefined cell line type (CVCL_M023)

## Figures

37 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12872208/full.md

---
Source: https://tomesphere.com/paper/PMC12872208