# Functional analysis and identification of miRNAs associated with lipid metabolism from milk-derived exosomes

**Authors:** Xin Lu, Tianyu Deng, Yue Liu, Xiaohan Zhang, Xue Bai, Xibi Fang, Runjun Yang

PMC · DOI: 10.1186/s40104-025-01331-5 · Journal of Animal Science and Biotechnology · 2026-02-04

## TL;DR

This study identifies miRNAs in milk exosomes that regulate lipid metabolism in cow mammary cells, offering new insights into milk fat synthesis.

## Contribution

The study reveals novel miRNA pathways (miR-423-5p/APOA5 and miR-125b/SLC27A1) that regulate lipid metabolism in bovine mammary epithelial cells via exosomes.

## Key findings

- Milk-derived exosomes contain miR-423-5p and miR-125b, which modulate lipid synthesis and oxidation in bovine mammary cells.
- miR-423-5p promotes lipid accumulation by targeting APOA5, while miR-125b inhibits lipolysis by repressing SLC27A1.
- Exosomal miRNAs represent a novel mechanism for regulating milk fat synthesis in lactating mammary glands.

## Abstract

Exosomes are crucial mediators of intercellular communication. As a key component of milk, milk-derived exosomes are abundant in genetic cargo, particularly microRNAs (miRNAs), indicating their potential role in regulating mammary gland physiology. Therefore, this study aimed to investigate the specificity of miRNAs in milk-derived exosomes and their regulatory roles in lipid synthesis in bovine mammary epithelial cells (BMECs).

Based on 17,838 DHI records showing a significantly higher milk fat percentage (MFP) in late lactation (4.24% ± 1.07%), 10 high- (5.96% ± 0.26%, HMF) and 10 low-MFP (1.68% ± 0.23%, LMF) cows were selected during this stage for milk-derived exosome isolation and miRNA profiling. Exosomes isolated via differential ultracentrifugation were verified as 50–150 nm vesicles expressing CD9, CD81, and TSG101. miRNA sequencing identified 1,320 differentially expressed miRNAs (496 upregulated and 824 downregulated) between the HMF_EXO and LMF_EXO groups. Uptake assays confirmed that BMECs internalized these exosomes, and qRT-PCR validation showed that miR-423-5p and miR-125b were significantly upregulated and downregulated in HMF_EXO- and LMF_EXO-treated BMECs, respectively. Functionally, exosomal miR-423-5p promoted intracellular lipid accumulation and TG synthesis in BMECs by targeting APOA5, whereas miR-125b inhibited lipolysis and fatty acid oxidation by repressing SLC27A1.

This study demonstrates that milk-derived exosomal miRNAs represent a novel mechanism for regulating milk fat synthesis. Specifically, miR-423-5p and miR-125b directly modulated lipid metabolism in BMECs via the miR-423-5p/APOA5 and miR-125b/SLC27A1 pathways. These findings provide new insights into the molecular regulation of milk fat synthesis and highlight the importance of exosome-mediated intercellular communication in the lactating mammary gland.

The online version contains supplementary material available at 10.1186/s40104-025-01331-5.

## Linked entities

- **Genes:** APOA5 (apolipoprotein A5) [NCBI Gene 116519], SLC27A1 (solute carrier family 27 member 1) [NCBI Gene 376497]
- **Species:** Bos taurus (taxon 9913)

## Full-text entities

- **Genes:** MIR30C (microRNA mir-30c) [NCBI Gene 791063] {aka MIRN30C, bta-mir-30c, mir-30c}, SREBF1 (sterol regulatory element binding transcription factor 1) [NCBI Gene 539361] {aka ADD1, SREBP-1, SREBP1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 100139219], EHHADH (enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase) [NCBI Gene 518852], GPAM (glycerol-3-phosphate acyltransferase, mitochondrial) [NCBI Gene 497202], MIR320A-2 (microRNA mir-320a-2) [NCBI Gene 790988] {aka MIR320, MIR320A, MIRN320, MIRN320A, bta-mir-320, bta-mir-320a-2}, PNPLA2 (patatin like phospholipase domain containing 2) [NCBI Gene 508493] {aka ATGL}, SLC27A1 (solute carrier family 27 member 1) [NCBI Gene 513787] {aka FATP-1}, AGPAT4 (1-acylglycerol-3-phosphate O-acyltransferase 4) [NCBI Gene 507456], VLDLR (very low density lipoprotein receptor) [NCBI Gene 282123], MECR (mitochondrial trans-2-enoyl-CoA reductase) [NCBI Gene 353301] {aka NRBF1}, LPL (lipoprotein lipase) [NCBI Gene 280843], GPAT4 (glycerol-3-phosphate acyltransferase 4) [NCBI Gene 511614] {aka AGPAT6}, APOA5 (apolipoprotein A5) [NCBI Gene 538914], TSG101 (tumor susceptibility 101) [NCBI Gene 507659], SCD (stearoyl-CoA desaturase) [NCBI Gene 280924] {aka SCD1}, Stearoyl-CoA desaturase [NCBI Gene 101906058], DGAT1 (diacylglycerol O-acyltransferase 1) [NCBI Gene 282609] {aka ARAT, DGAT}, MIR2382 (microRNA mir-2382) [NCBI Gene 100313464] {aka bta-mir-2382}, NDRG2 (NDRG family member 2) [NCBI Gene 515063], CD81 (CD81 molecule) [NCBI Gene 511435], TDG (thymine DNA glycosylase) [NCBI Gene 517825], AGPAT2 (1-acylglycerol-3-phosphate O-acyltransferase 2) [NCBI Gene 512112], ACACA (acetyl-CoA carboxylase alpha) [NCBI Gene 281590] {aka ACC1, ACCA}, FASN (fatty acid synthase) [NCBI Gene 281152], Mir148a (microRNA 148a) [NCBI Gene 387166] {aka Mirn148, Mirn148a, mir-148a}, ACTBP (actin beta pseudogene) [NCBI Gene 281594], CD9 (CD9 molecule) [NCBI Gene 280746], LIPE (lipase E, hormone sensitive type) [NCBI Gene 286879] {aka REH, hsl}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 281993], CPT1B (carnitine palmitoyltransferase 1B) [NCBI Gene 509459], LPIN1 (lipin 1) [NCBI Gene 537224] {aka lipin1}, ELOVL6 (ELOVL fatty acid elongase 6) [NCBI Gene 533333], SLC27A4 (solute carrier family 27 member 4) [NCBI Gene 514427], FAM3A (FAM3 metabolism regulating signaling molecule A) [NCBI Gene 614075]
- **Diseases:** mastitis (MESH:D008413), obesity (MESH:D009765), liver lipid disorders (MESH:D017093), cancer (MESH:D009369), MFP (MESH:D016269), hepatic lipid (MESH:D011017), SCC (MESH:D013001), weight gain (MESH:D015430), inflammation (MESH:D007249)
- **Chemicals:** Aliphatic Acid (MESH:D005227), Lipid (MESH:D008055), SDS (MESH:D012967), DEPC (MESH:D004047), nitrogen (MESH:D009584), JC-1 (MESH:C068624), glucose (MESH:D005947), DAPI (MESH:C007293), phosphotungstic acid (MESH:D010772), glycolipid (MESH:D006017), isopropanol (MESH:D019840), Phalloidin (MESH:D010590), CCK8 (-), EdU (MESH:C022811), urea nitrogen (MESH:C530477), LMF (MESH:C062941), carbon (MESH:D002244), paraformaldehyde (MESH:C003043), Triton X-100 (MESH:D017830), DMSO (MESH:D004121), poly (A) (MESH:D011061), glycerin (MESH:D005990), PVDF (MESH:C024865), TG (MESH:D013866), ATP (MESH:D000255), HMF (MESH:C008046), copper (MESH:D003300), CO2 (MESH:D002245), eicosanoids (MESH:D015777), Lipofectamine (MESH:C086724), PBS (MESH:D007854), Oil Red O (MESH:C011049), hematoxylin (MESH:D006416), CHOL (MESH:D002784), TG (MESH:D014280), CCK-8 (MESH:D012844), BODIPY (MESH:C095489), water (MESH:D014867)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), HMF — Homo sapiens (Human), Conditionally immortalized cell line (CVCL_4U96), EXO — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_SM58), LMF — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_W514)

## Full text

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## Figures

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## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12870503/full.md

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Source: https://tomesphere.com/paper/PMC12870503