# Senescent cells secrete chromatin components via senescence-associated extracellular particles

**Authors:** Sviatlana Zaretski, Jose L. Nieto Torres, Xue Lei, John P. Nolan, Malene Hansen, Peter D. Adams

PMC · DOI: 10.21203/rs.3.rs-8349343/v1 · Research Square · 2026-01-12

## TL;DR

Senescent cells release chromatin fragments through unique particles, which may trigger inflammation in other cells.

## Contribution

Discovery of a novel extracellular signaling mechanism by senescent cells involving chromatin components.

## Key findings

- Senescent cells secrete γH2AX and dsDNA via popcorn-like extracellular particles.
- Autophagy inhibition increases secretion of chromatin components.
- CCF-containing particles activate cGAS-STING signaling in non-senescent cells.

## Abstract

Senescent cells influence their surroundings through the senescence-associated secretory phenotype (SASP), an assortment of secreted molecules and macromolecular complexes. Among SASP’s intracellular drivers are cytoplasmic chromatin fragments (CCFs), nuclear-derived DNA that activates the pro-inflammatory cGAS/STING pathway. While autophagy contributes to CCFs degradation, the full repertoire of CCF fates and signaling functions remains unclear. Here, we show that senescent cells release CCF components, γH2AX and double-stranded DNA (dsDNA), into the extracellular space via an ESCRT-independent multivesicular body pathway. Secreted CCF components localize to extracellular particles exhibiting an unusual “popcorn”-like morphology, distinct from canonical small extracellular vesicles. Notably, inhibition of autophagy enhances secretion of CCF components and particles, suggesting an inverse relationship between intracellular clearance and extracellular release. A fraction of CCF-containing extracellular particles activates cGAS-STING signaling in non-senescent proliferating cells and is enriched in the circulation of aged mice, pointing to a previously unrecognized mode of extracellular signaling by senescent cells.

## Linked entities

- **Genes:** CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004], STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], H2AXA (Histone superfamily protein) [NCBI Gene 837409]

## Full-text entities

- **Genes:** CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, TP53BP1 (tumor protein p53 binding protein 1) [NCBI Gene 7158] {aka 53BP1, TDRD30, p202, p53BP1}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, CD81 (CD81 molecule) [NCBI Gene 975] {aka CVID6, S5.7, TAPA1, TSPAN28}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, CD9 (CD9 molecule) [NCBI Gene 928] {aka BTCC-1, DRAP-27, MIC3, MRP-1, TSPAN-29, TSPAN29}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, Sting1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 72512] {aka 2610307O08Rik, ERIS, MPYS, Mita, STING, STING-beta}, ATG16L1 (autophagy related 16 like 1) [NCBI Gene 55054] {aka APG16L, ATG16A, ATG16L, IBD10, WDR30}, MAP1LC3B (microtubule associated protein 1 light chain 3 beta) [NCBI Gene 81631] {aka ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a}, HRAS (HRas proto-oncogene, GTPase) [NCBI Gene 3265] {aka C-BAS/HAS, C-H-RAS, C-HA-RAS1, CTLO, H-RASIDX, HAMSV}, HMGB1 (high mobility group box 1) [NCBI Gene 3146] {aka HMG-1, HMG1, HMG3, SBP-1}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, Cgas (cyclic GMP-AMP synthase) [NCBI Gene 214763] {aka E330016A19Rik, Mb21d1}, GABARAPL1 (GABA type A receptor associated protein like 1) [NCBI Gene 23710] {aka APG8-LIKE, APG8L, ATG8, ATG8B, ATG8L, GEC1}, ATG5 (autophagy related 5) [NCBI Gene 9474] {aka APG5, APG5-LIKE, APG5L, ASP, SCAR25, hAPG5}, LMNB1 (lamin B1) [NCBI Gene 4001] {aka ADLD, LMN, LMN2, LMNB, MCPH26}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}, SMPD2 (sphingomyelin phosphodiesterase 2) [NCBI Gene 6610] {aka ISC1, NSMASE, NSMASE1}, H2ax (H2A.X variant histone) [NCBI Gene 15270] {aka H2A.X, H2afx, Hist5-2ax, gammaH2ax}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, CD63 (CD63 molecule) [NCBI Gene 967] {aka AD1, HOP-26, ME491, MLA1, OMA81H, Pltgp40}, MMP1 (matrix metallopeptidase 1) [NCBI Gene 4312] {aka CLG}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}
- **Diseases:** OIS (MESH:D000074723), chronic (MESH:D002908), chronic inflammation (MESH:D007249), RS (MESH:D053842), SASP (MESH:D008579), cancer (MESH:D009369)
- **Chemicals:** sucrose (MESH:D013395), ROS (MESH:D017382), PKH67 (MESH:C451241), uranyl acetate (MESH:C005460), PVDF (MESH:C024865), acid (MESH:D000143), O2 (MESH:D010100), acetone (MESH:D000096), ethanol (MESH:D000431), streptomycin (MESH:D013307), DMSO (MESH:D004121), paraformaldehyde (MESH:C003043), Triton X (MESH:D017830), penicillin (MESH:D010406), Tween-20 (MESH:D011136), C (MESH:D002244), saline (MESH:D012965), water (MESH:D014867), GW (MESH:C468773), saponin (MESH:D012503), Bis-Tris (MESH:C026272), AL (MESH:D000535), RG7388 (MESH:C586849), OptiPrep (MESH:C044834), Lipofectamine (MESH:C086724), CO2 (MESH:D002245), sodium deoxycholate (MESH:D003840), cGAMP (MESH:C584311), DAPI (MESH:C007293), methanol (MESH:D000432), SDS (MESH:D012967), TCA (MESH:D014238), lipid (MESH:D008055), gold (MESH:D006046), Alexa Fluor 488 (MESH:C000711379), acrylamide (MESH:D020106), BafA (MESH:C057620), isopropanol (MESH:D019840), ManA (MESH:C054474), AMPure (-), L-glutamine (MESH:D005973)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** P60A
- **Cell lines:** IMR90 — Homo sapiens (Human), Finite cell line (CVCL_0347), PD27 — Homo sapiens (Human), Parkinson disease, Induced pluripotent stem cell (CVCL_B5EM), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12869639/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12869639/full.md

## References

53 references — full list in the complete paper: https://tomesphere.com/paper/PMC12869639/full.md

---
Source: https://tomesphere.com/paper/PMC12869639