# Imaging spatial transcriptomics reveals molecular patterns underlying accumulation of p-Ser129 α-synuclein in a transgenic mouse model

**Authors:** Liam Horan-Portelance, Michiyo Iba, Dominic J. Acri, J. Raphael Gibbs, Mark R. Cookson

PMC · DOI: 10.1038/s41531-025-01246-y · NPJ Parkinson's Disease · 2026-01-16

## TL;DR

This study uses imaging spatial transcriptomics to identify vulnerable neurons and molecular patterns linked to phosphorylated α-synuclein accumulation in a mouse model of Parkinson's disease.

## Contribution

The study reveals specific neuronal subtypes and genes, including Plk2 and hSNCA, associated with p-Ser129 α-synuclein accumulation in transgenic mice.

## Key findings

- Neuronal subtypes in the cortex and hippocampus preferentially develop p-Ser129 α-synuclein accumulation.
- Plk2 and hSNCA are key to p-Ser129 α-synuclein development in vulnerable neurons.
- p-Ser129 α-synuclein alters mitochondrial and endolysosomal gene expression.

## Abstract

In Parkinson’s disease and dementia with Lewy bodies, aggregated and phosphorylated α-synuclein appears in select neurons throughout cortical and subcortical regions, but little is currently known about why certain populations are selectively vulnerable. Here, using imaging spatial transcriptomics (IST) coupled with downstream immunofluorescence for α-synuclein phosphorylated at Ser129 (pSyn) in the same tissue sections, we identified neuronal subtypes in the cortex and hippocampus of transgenic human α-synuclein-overexpressing mice that preferentially developed pSyn accumulation. Additionally, we investigated the transcriptional underpinnings of this vulnerability, pointing to expression of Plk2, which phosphorylates α-synuclein at Ser129, and human SNCA (hSNCA), as key to pSyn development. Finally, we performed differential expression analysis, revealing gene expression changes broadly downstream of hSNCA overexpression, as well as pSyn-dependent alterations in mitochondrial and endolysosomal genes. Overall, this study yields new insights into the formation of phospho-α-synuclein and its downstream effects in a synucleinopathy mouse model.

## Linked entities

- **Genes:** PLK2 (polo like kinase 2) [NCBI Gene 10769], SNCA (synuclein alpha) [NCBI Gene 6622]
- **Diseases:** Parkinson’s disease (MONDO:0005180), dementia with Lewy bodies (MONDO:0007488)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Pdgfra (platelet derived growth factor receptor, alpha polypeptide) [NCBI Gene 18595] {aka CD140a, Pdgfr-2}, Cldn5 (claudin 5) [NCBI Gene 12741] {aka MBEC1, Tmvcf}, Capn1 (calpain 1) [NCBI Gene 12333] {aka Capa-1, Capa1, mu-calpin}, Fmod (fibromodulin) [NCBI Gene 14264] {aka FM, SLRR2E}, Rprm (reprimo, TP53 dependent G2 arrest mediator candidate) [NCBI Gene 67874] {aka 2410012A13Rik, Reprimo}, Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3) [NCBI Gene 52897] {aka Fox-3, Hrnbp3, NeuN, Neuna60}, Atp13a2 (ATPase type 13A2) [NCBI Gene 74772] {aka 1110012E06Rik}, Laptm5 (lysosomal-associated protein transmembrane 5) [NCBI Gene 16792] {aka E3, Stra13}, Vps13c (vacuolar protein sorting 13C) [NCBI Gene 320528] {aka C230055H22Rik, chorein}, Pvalb (parvalbumin) [NCBI Gene 19293] {aka PV, Parv, Pva}, Plk2 (polo like kinase 2) [NCBI Gene 20620] {aka Snk}, Kcnh5 (potassium voltage-gated channel, subfamily H (eag-related), member 5) [NCBI Gene 238271] {aka Eag2, mEag2}, Usp10 (ubiquitin specific peptidase 10) [NCBI Gene 22224] {aka 2610014N07Rik, UBPO, Uchrp, mKIAA0190}, Fibcd1 (fibrinogen C domain containing 1) [NCBI Gene 98970], Rorb (RAR-related orphan receptor beta) [NCBI Gene 225998] {aka Nr1f2, RZR-beta, RZRB, Rorbeta, hstp}, Hspa4l (heat shock protein 4 like) [NCBI Gene 18415] {aka 94kDa, APG-1, Osp94}, Slit2 (slit guidance ligand 2) [NCBI Gene 20563] {aka Drad-1, E030015M03Rik, E130320P19Rik, Slil3, b2b1200.1Clo, mKIAA4141}, Map1lc3b (microtubule-associated protein 1 light chain 3 beta) [NCBI Gene 67443] {aka 1010001C15Rik, Atg8, LC3b, MAP1A/MAP1B, Map1lc3}, Uchl1 (ubiquitin carboxy-terminal hydrolase L1) [NCBI Gene 22223] {aka PGP 9.5, PGP9.5, UCH-L1, UCHL-1, gad}, Sesn3 (sestrin 3) [NCBI Gene 75747] {aka 5630400E15Rik, SEST3}, Foxp2 (forkhead box P2) [NCBI Gene 114142] {aka 2810043D05Rik, CAG-16, D0Kist7}, Spag16 (sperm associated antigen 16) [NCBI Gene 66722] {aka 4921511D23Rik, 4930524F24Rik, 4930585K05Rik, Pf20, Wdr29}, Atp6ap2 (ATPase, H+ transporting, lysosomal accessory protein 2) [NCBI Gene 70495] {aka (P)RR, 5730403E06Rik, APT6M8-9, ATP6M8-9, Atp6ip2, M8-9}, Plekha2 (pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2) [NCBI Gene 83436] {aka 6430512N22Rik, TAPP2}, Cplx3 (complexin 3) [NCBI Gene 235415] {aka CpxIII, ERGIC-53L, ERGL, Lamn1l, Lman1l}, Ly6a (lymphocyte antigen 6 family member A) [NCBI Gene 110454] {aka Ly-6A.2, Ly-6A/E, Ly-6E.1, Sca-1, Sca1, TAP}, Snca (synuclein, alpha) [NCBI Gene 20617] {aka NACP, alpha-Syn, alphaSYN}, Sema3e (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E) [NCBI Gene 20349] {aka 6430702L12, Semah, mKIAA0331}, Sst (somatostatin) [NCBI Gene 20604] {aka SOM, SRIF, SS, Smst}, Igf2 (insulin-like growth factor 2) [NCBI Gene 16002] {aka Igf-2, Igf-II, M6pr, Mpr, Peg2}, Nbr1 (NBR1, autophagy cargo receptor) [NCBI Gene 17966] {aka mKIAA0049}, Ccn2 (cellular communication network factor 2) [NCBI Gene 14219] {aka Ctgf, Fisp12, Hcs24, fisp-12}, Ctsb (cathepsin B) [NCBI Gene 13030] {aka APPM, CB}, Bcl11b (B cell leukemia/lymphoma 11B) [NCBI Gene 58208] {aka 9130430L19Rik, B630002E05Rik, BCL-11B, Ctip2, Rit1}, Cspg4 (chondroitin sulfate proteoglycan 4) [NCBI Gene 121021] {aka 4732461B14Rik, AN2, Cspg4a, NG2}, Opalin (oligodendrocytic myelin paranodal and inner loop protein) [NCBI Gene 226115] {aka Tmem10, Tmp10}, Sort1 (sortilin 1) [NCBI Gene 20661] {aka 2900053A11Rik, Ntr3, Ntsr3}, Slc17a7 (solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7) [NCBI Gene 72961] {aka 2900052E22Rik, Vglut1}, Chchd2 (coiled-coil-helix-coiled-coil-helix domain containing 2) [NCBI Gene 14004] {aka Etohi6}, Pink1 (PTEN induced putative kinase 1) [NCBI Gene 68943] {aka 1190006F07Rik, BRPK, mFLJ00387}, Prkn (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 50873] {aka Park2}, Gad1 (glutamate decarboxylase 1) [NCBI Gene 14415] {aka EP10, Gad-1}, Aqp4 (aquaporin 4) [NCBI Gene 11829] {aka WCH4}, Psme1 (proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)) [NCBI Gene 19186] {aka PA28a}, Carmn (cardiac mesoderm enhancer-associated non-coding RNA) [NCBI Gene 328968] {aka Carmen, E330013P06, Gm16908, Mir143hg}, Lrp13 (ow density lipoprotein-related protein 13) [NCBI Gene 100502846] {aka Gm19410}, Lamp5 (lysosomal-associated membrane protein family, member 5) [NCBI Gene 76161] {aka 3110035N03Rik, 6330527O06Rik, BAD-LAMP, LAMP-5}, Scoc (short coiled-coil protein) [NCBI Gene 56367] {aka 0610011C06Rik, 2810002J11Rik, SCOCO}, Ppp2ca (protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform) [NCBI Gene 19052] {aka PP2A}, Vps35 (VPS35 retromer complex component) [NCBI Gene 65114] {aka Mem3}, Rab27b (RAB27B, member RAS oncogene family) [NCBI Gene 80718] {aka 2310021G14Rik, B130064M09Rik}, Prox1 (prospero homeobox 1) [NCBI Gene 19130] {aka A230003G05Rik, PROX-1}, Dnajb6 (DnaJ heat shock protein family (Hsp40) member B6) [NCBI Gene 23950] {aka HSJ-2, Mrj, mDj4}, Slc39a12 (solute carrier family 39 (zinc transporter), member 12) [NCBI Gene 277468] {aka Gm731}, Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) [NCBI Gene 66734] {aka 1010001H21Rik, 4922501H04Rik, LC3, LC3a}, Calb2 (calbindin 2) [NCBI Gene 12308] {aka CR}, Pou3f1 (POU domain, class 3, transcription factor 1) [NCBI Gene 18991] {aka Oct-6, Oct6, Otf-6, Otf6, Scip, Test1}, Deptor (DEP domain containing MTOR-interacting protein) [NCBI Gene 97998] {aka Depdc6}, Nub1 (negative regulator of ubiquitin-like proteins 1) [NCBI Gene 53312] {aka 4931404D21Rik, 6330412F12Rik, BS4, NY-REN-18}, Cux2 (cut-like homeobox 2) [NCBI Gene 13048] {aka 1700051K22Rik, Cutl2, Cux-2}
- **Diseases:** tauopathy (MESH:D024801), InNs (MESH:D009410), DLB (MESH:D020961), neurotoxic (MESH:D020258), dementia with (MESH:D003704), IST (MESH:C564543), cytotoxicity (MESH:D064420), mitochondrial damage (MESH:D028361), neurodegenerative diseases (MESH:D019636), MSA (MESH:D019578), alpha-synucleinopathy (MESH:D000080874), NFTs (MESH:D055956), behavioral deficits (MESH:D019958), inflammation (MESH:D007249), PD (MESH:D010300), Lewy (MESH:D018827), neurocognitive deficits (MESH:D009461), AD (MESH:D000544), proteinopathies (MESH:D057165), Lewy pathology (MESH:D005598)
- **Chemicals:** Ca2+ (-), Lipofuscin (MESH:D008062), AlexaFluor 647 (MESH:C569686), xylene (MESH:D014992), PFF (MESH:C412892), citrate (MESH:D019343), calcium (MESH:D002118), formalin (MESH:D005557), DAPI (MESH:C007293), Texas Red (MESH:C034657), paraffin (MESH:D010232), pentobarbital (MESH:D010424), paraformaldehyde (MESH:C003043), ethanol (MESH:D000431)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** G2019S, Ser/Thr

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12868666/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12868666/full.md

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Source: https://tomesphere.com/paper/PMC12868666