# Cyclic di-GMP suppresses cancer metastasis by targeting proteasome 26S subunit non-ATPase 3 independently of STING

**Authors:** Jieqiong Wang, Alexander Mrozek, Kewen Hu, Hanyu You, Sarah E. Traverse, Hyemin Lee, Shelya X. Zeng, Xiufeng Pang, Heewon Park, Hua Lu

PMC · DOI: 10.1038/s41392-025-02553-9 · Signal Transduction and Targeted Therapy · 2026-02-04

## TL;DR

This study shows that the molecule c-di-GMP can stop cancer from spreading by targeting a protein called PSMD3, offering a new treatment approach for metastatic breast cancer.

## Contribution

The paper identifies PSMD3 as a novel target of c-di-GMP and reveals a new mechanism of action independent of STING.

## Key findings

- Cyclic di-GMP inhibits cancer metastasis, especially in breast cancer, with minimal toxicity.
- Cyclic di-GMP suppresses NF-κB signaling by binding to PSMD3 and disrupting its interaction with TBK1.
- PSMD3 is highly expressed in metastatic breast cancers, making it a promising therapeutic target.

## Abstract

Cancer metastasis is the primary cause of cancer-related mortality, yet effective treatments remain limited. There is an urgent need to develop novel therapeutic strategies to combat metastasis. In this study, we demonstrate that the bacterial intracellular signaling molecule cyclic di-GMP (c-di-GMP, or cdG) exerts a potent inhibitory effect on cancer metastasis, particularly in metastatic breast cancer, via both in vitro and in vivo models, with little toxicity to mice. Interestingly, this antimetastatic function is achieved by suppressing the NF-κB signaling pathway, which is important for cancer progression and metastasis, but independent of STING, a previously identified c-di-GMP sensor and NF-κB regulator in mammalian cells. Surprisingly, c-di-GMP inhibits NF-κB activity (p-p65) by directly binding to the proteasome 26S subunit non-ATPase 3 (PSMD3) that we identified as a new TBK1-binding activator, and disrupting the interaction between PSMD3 and TBK1. This PSMD3-TBK1 interaction boosts the phosphorylation and activation of TBK1, representing a noncanonical function of PSMD3 distinct from its established role in proteasomal degradation. Significantly, PSMD3 is highly expressed in malignant and metastatic breast cancers, particularly triple-negative breast cancer. The compelling evidence strongly suggests PSMD3 as a promising target for developing a therapy against metastatic breast cancer. These findings underscore the high potential of c-di-GMP as a safe and effective therapeutic agent for metastatic cancers by targeting the PSMD3-TBK1-NF-κB pathway.

## Linked entities

- **Genes:** PSMD3 (proteasome 26S subunit, non-ATPase 3) [NCBI Gene 5709], TBK1 (TANK binding kinase 1) [NCBI Gene 29110], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970]
- **Proteins:** PSMD3 (proteasome 26S subunit, non-ATPase 3), TBK1 (TANK binding kinase 1), NFKB1 (nuclear factor kappa B subunit 1), Lcp1 (lymphocyte cytosolic protein 1)
- **Chemicals:** cyclic di-GMP (PubChem CID 135440063), cdG (PubChem CID 51037954)
- **Diseases:** cancer (MONDO:0004992), triple-negative breast cancer (MONDO:0005494)

## Full-text entities

- **Genes:** NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792] {aka EDAID2, IKBA, MAD-3, NFKBI}, ILF3 (interleukin enhancer binding factor 3) [NCBI Gene 3609] {aka CBTF, DRBF, DRBP76, MMP4, MPHOSPH4, MPP4}, ICAM1 (intercellular adhesion molecule 1) [NCBI Gene 3383] {aka BB2, CD54, P3.58}, PSMD4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4) [NCBI Gene 5710] {aka AF, AF-1, ASF, MCB1, Rpn10, S5A}, Psmd3 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 3) [NCBI Gene 22123] {aka AntP91a, D11Bwg1349e, Psd3, Tstap91a}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, CXCL5 (C-X-C motif chemokine ligand 5) [NCBI Gene 6374] {aka ENA-78, SCYB5}, COL11A2 (collagen type XI alpha 2 chain) [NCBI Gene 1302] {aka DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, TNFAIP3 (TNF alpha induced protein 3) [NCBI Gene 7128] {aka A20, AIFBL1, AISBL, OTUD7C, TNFA1P2}, HSPA5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 3309] {aka BIP, GRP78, HEL-S-89n}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, PSMC4 (proteasome 26S subunit, ATPase 4) [NCBI Gene 5704] {aka MIP224, RPT3, S6, TBP-7, TBP7}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, SEM1 (SEM1 26S proteasome subunit) [NCBI Gene 7979] {aka C7orf76, DSS1, ECD, PSMD15, SHFD1, SHFM1}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, CXCL3 (C-X-C motif chemokine ligand 3) [NCBI Gene 2921] {aka CINC-2b, GRO3, GROg, MIP-2b, MIP2B, SCYB3}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, CXCL2 (C-X-C motif chemokine ligand 2) [NCBI Gene 2920] {aka CINC-2a, GRO2, GROb, MGSA-b, MIP-2a, MIP2}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IKBKE (inhibitor of nuclear factor kappa B kinase subunit epsilon) [NCBI Gene 9641] {aka IKK-E, IKK-i, IKKE, IKKI}, NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, FLT3LG (fms related receptor tyrosine kinase 3 ligand) [NCBI Gene 2323] {aka FL, FLG3L, FLT3L, IMD125}, VCAM1 (vascular cell adhesion molecule 1) [NCBI Gene 7412] {aka CD106, INCAM-100}, Tbk1 (TANK-binding kinase 1) [NCBI Gene 56480] {aka 1200008B05Rik}, PSMD3 (proteasome 26S subunit, non-ATPase 3) [NCBI Gene 5709] {aka P58, RPN3, S3, TSTA2}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}
- **Diseases:** Lung metastases (MESH:D009362), CML (MESH:D015464), breast metastases (MESH:D061325), mammary tumor (MESH:D015674), colon cancer (MESH:D015179), inflammation (MESH:D007249), TNBC (MESH:D064726), lung metastatic (MESH:D008171), Breast Invasive Carcinoma (MESH:D001943), tissue injury (MESH:D017695), infection (MESH:D007239), pancreatic cancer (MESH:D010190), invasive disease (MESH:D009361), Cancer metastasis (MESH:D009369), melanoma (MESH:D008545), Cancer lung metastasis (MESH:D008175), tumorigenic (MESH:D002471), toxicity (MESH:D064420)
- **Chemicals:** Tween-20 (MESH:D011136), penicillin (MESH:D010406), Triton X-100 (MESH:D017830), NP40 (MESH:C010615), amine (MESH:D000588), paraformaldehyde (MESH:C003043), streptomycin (MESH:D013307), EDTA (MESH:D004492), eosin (MESH:D004801), EDC (MESH:C024565), Cyclic di-GMP (MESH:C062025), adenine nucleotides (MESH:D000227), H&amp;E (MESH:D006371), PVDF (MESH:C024865), CO2 (MESH:D002245), paraffin (MESH:D010232), PBS (MESH:D007854), crystal violet (MESH:D005840), DTT (MESH:D004229), Hematoxylin (MESH:D006416), silver (MESH:D012834), hydrogen (MESH:D006859), HEPES (MESH:D006531), hydrogen peroxide (MESH:D006861), His (MESH:D006639), NaCl (MESH:D012965), TRIzol (MESH:C411644), guanine (MESH:D006147), SDS (MESH:D012967), formalin (MESH:D005557), nitrogen (MESH:D009584), HCl (MESH:D006851), cGAMP (MESH:C584311), agarose (MESH:D012685), deoxycholate (MESH:D003840), c-di-AMP (MESH:C528998), 3',5'-cyclic diguanylic acid (-), MgCl2 (MESH:D015636), guanine nucleotides (MESH:D006150), sodium citrate (MESH:D000077559), phenylmethylsulfonyl fluoride (MESH:D010664), peroxides (MESH:D010545), biotin (MESH:D001710)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Komagataeibacter xylinus (species) [taxon 28448], Mycoplasma (genus) [taxon 2093]
- **Cell lines:** H1299 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0060), MDA-MB-231-Luc2 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_D582), B16-F10 — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_0159), BT-549 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_1092), PANC-1 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0480), 4T1 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_0125), Calu-1 — Homo sapiens (Human), Lung squamous cell carcinoma, Cancer cell line (CVCL_0608), CVCL_J239 — Mus musculus (Mouse), Hybridoma (CVCL_L687), 4T1-Luc — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_J239), B16-F10-Luc — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_4Y00), AsPC-1 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0152), SW1990 — Homo sapiens (Human), Pancreatic adenocarcinoma, Cancer cell line (CVCL_1723), luc — Homo sapiens (Human), Transformed cell line (CVCL_JY95), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), MDA-MB-231-Luc — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_JZ05), Hs578T — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0332), CVCL_0152 — Homo sapiens (Human), Transformed cell line (CVCL_K421), LoVo — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0399), 28a — Oryctolagus cuniculus (Rabbit), Transformed cell line (CVCL_6E94), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), Cat — Felis catus (Cat), Finite cell line (CVCL_XB61), C57 — Mus musculus (Mouse), Hybridoma (CVCL_A9KB)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12868630/full.md

## References

9 references — full list in the complete paper: https://tomesphere.com/paper/PMC12868630/full.md

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Source: https://tomesphere.com/paper/PMC12868630