# The ubiquitination–autophagy axis in cancer therapy resistance: mechanistic insights and therapeutic opportunities

**Authors:** Hengrui Zhang, Hanxi Yan, Yulin Liu, Anqi Zeng, Linjiang Song

PMC · DOI: 10.3389/fphar.2025.1722559 · Frontiers in Pharmacology · 2026-01-21

## TL;DR

This paper reviews how the interaction between ubiquitination and autophagy influences cancer therapy resistance and explores new treatment strategies.

## Contribution

The paper systematically summarizes novel regulatory circuits linking ubiquitination and autophagy in cancer therapy resistance.

## Key findings

- The TRIM65–miR-138-5p–ATG7 pathway regulates autophagy in non-small cell lung cancer.
- The CRL4–mitophagy pathway influences ovarian cancer resistance through ubiquitination.
- USP14–Skp2 axis contributes to BRAF inhibitor resistance in cancer.

## Abstract

Therapy resistance is a major challenge in cancer treatment. Growing evidences reveal that the interaction between ubiquitination and autophagy plays a key role in regulating resistance to chemotherapy, radiotherapy, targeted therapy, and immunotherapy. In this review, we systematically summarize recent studies that reveal how specific E3 ligases, deubiquitinating enzymes, and ubiquitin-like modifiers influence autophagic flux and modulate the tumor response. We focus on key regulatory circuits—such as the Tripartite-motif protein 65–miR-138-5p–Autophagy related 7 (TRIM65–miR-138-5p–ATG7)pathway in non-small cell lung cancer, the Cullin-RING Ligase 4(CRL4)–mitophagy signaling pathway in ovarian cancer, and the Ubiquitin Specific Peptidase 14–S-phase kinase-associated protein 2(USP14–Skp2) axis in B-Raf proto-oncogene (BRAF) inhibitor resistance—illustrating the dual regulatory functions of ubiquitin-dependent protein turnover and autophagy. Furthermore, we highlight how noncoding RNAs and the tumor microenvironment influence ubiquitination-modulated autophagy and contribute to immune resistance or DNA repair remodeling. Finally, we discuss potential therapeutic strategies, including Proteolysis Targeting Chimeras (PROTACs), dual E3 ligase/autophagy inhibitors, and autophagy flux modulators, to overcome resistance and enhance treatment efficacy across multiple cancer types. These insights establish the foundation for targeting the ubiquitin–autophagy network as a cohesive strategy to combat refractory cancer.

## Linked entities

- **Genes:** TRIM65 (tripartite motif containing 65) [NCBI Gene 201292], ATG7 (autophagy related 7) [NCBI Gene 10533], IL17RB (interleukin 17 receptor B) [NCBI Gene 55540], USP14 (ubiquitin specific peptidase 14) [NCBI Gene 9097], SKP2 (S-phase kinase associated protein 2) [NCBI Gene 6502], BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673]
- **Proteins:** APG7 (ThiF family protein)
- **Diseases:** non-small cell lung cancer (MONDO:0005233), ovarian cancer (MONDO:0005140)

## Full-text entities

- **Genes:** SKP2 (S-phase kinase associated protein 2) [NCBI Gene 6502] {aka FBL1, FBXL1, FLB1, p45}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, USP14 (ubiquitin specific peptidase 14) [NCBI Gene 9097] {aka TGT, Ubp6}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, TRIM65 (tripartite motif containing 65) [NCBI Gene 201292] {aka 4732463G12Rik}, IL17RB (interleukin 17 receptor B) [NCBI Gene 55540] {aka CRL4, EVI27, IL17BR, IL17RH1}
- **Diseases:** non-small cell lung cancer (MESH:D002289), ovarian cancer (MESH:D010051), cancer (MESH:D009369)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12868213/full.md

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12868213/full.md

## References

106 references — full list in the complete paper: https://tomesphere.com/paper/PMC12868213/full.md

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Source: https://tomesphere.com/paper/PMC12868213