# The impact of the expression signatures of LncRNAs HBBP1 and XIST on the diagnostic significance of patients with β-Thalassemia

**Authors:** Abdallah M. Gameel, Shimaa Abdelsattar, Zeinab A. Kasemy, Mai El-Sayad Abd El-Hamid, Eman Masoud Abd ElGayed, Basma M. Abdelgawed, Amira Fathy El-Fiky, Mariam E. Labib, Sabry M. Abdelmageed, Mahmoud Ahmed El Hawy, Yasmin Mohsen, Hanan M. Bedair

PMC · DOI: 10.1007/s00277-026-06751-5 · Annals of Hematology · 2026-02-04

## TL;DR

This study explores how two long non-coding RNAs, HBBP1 and XIST, may help diagnose different types of β-thalassemia in children.

## Contribution

The study identifies HBBP1 and XIST as potential biomarkers for distinguishing β-thalassemia subtypes.

## Key findings

- HBBP1 and XIST were highly expressed in β-TM compared to β-TI and healthy controls.
- Expression of both lncRNAs correlated with clinical features like jaundice and splenectomy.
- ROC analysis showed 82% sensitivity for HBBP1 and 80% for XIST in differentiating β-TM from β-TI.

## Abstract

β-thalassemia is an inherited blood disorder with long-term associated complications. The purpose of this study was to evaluate the clinical significance of the lncRNA-HBBP1 and lncRNA-XIST expression profiles in the diagnosis of β-thalassemia patients. One hundred children patients with β-thalassemia participated in this case-control study: 50 patients diagnosed as Beta Thalassemia Major (β-TM) and 50 patients diagnosed as Beta Thalassemia Intermedia (β-TI) groups. Furthermore, there were 50 children as healthy control group. Assessment of both genes’ expression was performed by RT-qPCR. The findings displayed that both lncRNA-HBBP1 and lncRNA-XIST were highly expressed within the β-TM group than in the β-TI and the control groups (P < 0.001 for both). The lncRNA-HBBP1 and lncRNA-XIST expression were significantly higher in β-thalassemia patients presented with jaundice, thalassemia facies, or organomegaly (p < 0.001 for all). In addition, lncRNA-XIST expression was significantly higher in β-thalassemia patients with splenectomy (p = 0.002). Spearman correlation revealed that the expression of both genes was significantly correlated with HbF % in β-TM and β-TI groups (p < 0.001 for both). Based on the ROC curve analysis, the sensitivity of lncRNA-HBBP1 and lncRNA-XIST for discriminating the β-TM group from the β-TI group was 82% and 80%, respectively. Collectively, the examined lncRNAs could offer novel biomarkers for β-thalassemia disorder once confirmed in extensive upcoming investigations.

## Linked entities

- **Genes:** HBBP1 (hemoglobin subunit beta pseudogene 1) [NCBI Gene 3044], XIST (X inactive specific transcript) [NCBI Gene 7503]
- **Diseases:** Beta Thalassemia Major (MONDO:0016486), Beta Thalassemia Intermedia (MONDO:0016487)

## Full-text entities

- **Genes:** PMCH (pro-melanin concentrating hormone) [NCBI Gene 5367] {aka MCH, ppMCH}, HBB (hemoglobin subunit beta) [NCBI Gene 3043] {aka CD113t-C, ECYT6, beta-globin}, TAL1 (TAL bHLH transcription factor 1, erythroid differentiation factor) [NCBI Gene 6886] {aka SCL, TCL5, bHLHa17, tal-1}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, CDKN2B-AS1 (CDKN2B and CDKN2A antisense cis and trans regulatory RNA 1) [NCBI Gene 100048912] {aka 66CTG, ANRIL, CDKN2B-AS, CDKN2BAS, NCRNA00089, PCAT12}, HBD (hypophosphatemic bone disease) [NCBI Gene 100187828], HBD (hemoglobin subunit delta) [NCBI Gene 3045] {aka HBK}, HBBP1 (hemoglobin subunit beta pseudogene 1) [NCBI Gene 3044] {aka HBH1, HBHP, HBHps}, BGLT3 (beta globin locus transcript 3) [NCBI Gene 103344929] {aka BGL3, LINC01083, lncRNA-BGL3}, HBE1 (hemoglobin subunit epsilon 1) [NCBI Gene 3046] {aka HBE}, XIST (X inactive specific transcript) [NCBI Gene 7503] {aka DXS1089, DXS399E, LINC00001, NCRNA00001, SXI1, swd66}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) [NCBI Gene 3178] {aka ALS19, ALS20, HNRPA1, HNRPA1L3, IBMPFD3, MPD3}, EPO (erythropoietin) [NCBI Gene 2056] {aka DBAL, ECYT5, EP, MVCD2}
- **Diseases:** hypoxia (MESH:D000860), overweight (MESH:D050177), -Transfusion-Dependent Thalassemia (MESH:D065227), Thalassemia (MESH:D013789), inherited blood disorder (MESH:D025861), metastasis-associated lung adenocarcinoma (MESH:D000077192), MIAT (MESH:D009203), wasting (MESH:D019282), hepatosplenomegaly (MESH:C535727), underweight (MESH:D013851), anemia (MESH:D000740), Beta Thalassemia Intermedia (MESH:D017086), jaundice (MESH:D007565), Hereditary Persistence of Fetal Hemoglobin (OMIM:617101), thalassemia facies (MESH:D019066), organomegaly (MESH:D016878), CBC (MESH:D006402), infections (MESH:D007239), hemoglobinopathies (MESH:D006453), obese (MESH:D009765), hypochromic microcytic anemia (MESH:C536357), cancer (MESH:D009369), alpha thalassemia (MESH:D017085), stunted or excessive growth (MESH:D006130)
- **Chemicals:** EDTA (MESH:D004492), SYBR Green (MESH:C098022)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** 001589.1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

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## References

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Source: https://tomesphere.com/paper/PMC12868124