# Cross-tissue transcriptome-wide association identify novel T1D susceptibility genes and drug candidates

**Authors:** Yiming Liu, Yu Cao, Yaohui Jiang

PMC · DOI: 10.3389/fimmu.2025.1735004 · Frontiers in Immunology · 2026-01-21

## TL;DR

This study identifies new genes linked to type 1 diabetes and suggests potential drug candidates for treatment.

## Contribution

The study discovers seven novel T1D susceptibility genes and proposes three druggable targets with specific compounds.

## Key findings

- Ten genes associated with T1D risk were identified, seven of which are novel.
- Three genes (ELK4, SULT1A2, and WFS1) were prioritized as druggable targets.
- Potential therapeutic agents COMPOUND 5G and DCLK1-IN-1 were identified through computational analyses.

## Abstract

The genetic mechanisms underlying type 1 diabetes (T1D) remain incompletely understood, limiting the development of targeted therapies.

We performed an integrative genetic analysis to identify T1D susceptibility genes and therapeutic targets. This included a cross-tissue transcriptome-wide association study (TWAS) to pinpoint genes with genetically predicted expression associated with T1D risk, followed by Mendelian randomization to infer causality. Identified genes were further characterized through pathway, cell-type enrichment, drug prediction, molecular docking, and phenome-wide association studies.

We identified ten genes associated with T1D risk, seven of which (ELK4, PHACTR4, MAST2, ST7L, C1orf216, SULT1A2, and WFS1) are novel candidates in this context. Three genes (ELK4, SULT1A2, and WFS1) were prioritized as druggable targets, with COMPOUND 5G and DCLK1-IN-1 emerging as potential therapeutic agents through computational analyses.

Our study reveals novel genetic associations and immune-related pathways in T1D pathogenesis, and proposes specific genes and compounds as promising focal points for future mechanistic and therapeutic exploration.

## Linked entities

- **Genes:** ELK4 (ETS transcription factor ELK4) [NCBI Gene 2005], PHACTR4 (phosphatase and actin regulator 4) [NCBI Gene 65979], MAST2 (microtubule associated serine/threonine kinase 2) [NCBI Gene 23139], ST7L (suppression of tumorigenicity 7 like) [NCBI Gene 54879], C1orf216 (chromosome 1 open reading frame 216) [NCBI Gene 127703], SULT1A2 (sulfotransferase family 1A member 2) [NCBI Gene 6799], WFS1 (wolframin ER transmembrane glycoprotein) [NCBI Gene 7466]
- **Chemicals:** DCLK1-IN-1 (PubChem CID 134457640)
- **Diseases:** type 1 diabetes (MONDO:0005147)

## Full-text entities

- **Genes:** ELK4 (ETS transcription factor ELK4) [NCBI Gene 2005] {aka SAP1}, WFS1 (wolframin ER transmembrane glycoprotein) [NCBI Gene 7466] {aka CTRCT41, WFRS, WFS, WFSL}, SULT1A2 (sulfotransferase family 1A member 2) [NCBI Gene 6799] {aka HAST4, P-PST, P-PST 2, ST1A2, STP2, TSPST2}, C1orf216 (chromosome 1 open reading frame 216) [NCBI Gene 127703], MAST2 (microtubule associated serine/threonine kinase 2) [NCBI Gene 23139] {aka MAST205, MTSSK}, ST7L (suppression of tumorigenicity 7 like) [NCBI Gene 54879] {aka FAM4B, ST7R, STLR}, PHACTR4 (phosphatase and actin regulator 4) [NCBI Gene 65979] {aka PPP1R124}
- **Diseases:** T1D (MESH:D003922)
- **Chemicals:** COMPOUND 5G (-)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12867781/full.md

## References

88 references — full list in the complete paper: https://tomesphere.com/paper/PMC12867781/full.md

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Source: https://tomesphere.com/paper/PMC12867781