# COPB2 drives gastric cancer progression via PI3K/AKT/NF-κB signaling: a multi-omics and functional study

**Authors:** Hailong Li, Dong Wei, Xiaqing Gao, Rong Su, Chunting Yang, Ping Tang, Xiqiu Yu, Yuhong Wu

PMC · DOI: 10.1080/19336918.2026.2620945 · Cell Adhesion & Migration · 2026-01-31

## TL;DR

This study shows that COPB2 promotes gastric cancer by activating specific signaling pathways and could be a potential treatment target.

## Contribution

The novel finding is that COPB2 functions as an oncogene in gastric cancer via PI3K/AKT/NF-κB signaling.

## Key findings

- COPB2 is upregulated in gastric cancer tissues and correlates with advanced tumor stage and lymphatic invasion.
- Knocking down COPB2 suppresses cancer cell proliferation, migration, and induces apoptosis.
- COPB2 modulates cell cycle and signaling pathways by regulating oncogenic and tumor suppressor genes.

## Abstract

This study investigated the role of COPB2 in gastric cancer (GC) pathogenesis. Analysis of TCGA datasets and tissue microarrays revealed its upregulation in GC tissues compared to normal adjacent tissues, which was correlated with advanced tumor stage and lymphatic invasion and demonstrated significant diagnostic value (AUC = 0.895 and 0.851). Functional assays using lentiviral-mediated silencing in GC cells showed that COPB2 knockdown suppressed cell proliferation and migration, induced G0/G1-phase arrest, and promoted apoptosis. Mechanistic investigations through microarray, KEGG, and IPA analyses indicated that COPB2 dysregulation inactivated the PI3K/AKT and NF-κB signaling pathways. This led to the downregulation of key oncogenic effectors including Slug, FN1, CDH2, F2RL1, CDK6, CCND1, MMP9, CDKN2A, and SQSTM1, while upregulating tumor suppressors CDKN1B, CDKN1A, and DDIT3. In conclusion, COPB2 acts as an oncogene in GC, driving tumor progression through modulation of the cell cycle and key signaling pathways, highlighting its potential as a therapeutic target.

## Linked entities

- **Genes:** COPB2 (coat protein complex I subunit beta 2) [NCBI Gene 9276], SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591], FN1 (fibronectin 1) [NCBI Gene 2335], CDH2 (cadherin 2) [NCBI Gene 1000], F2RL1 (F2R like trypsin receptor 1) [NCBI Gene 2150], CDK6 (cyclin dependent kinase 6) [NCBI Gene 1021], CCND1 (cyclin D1) [NCBI Gene 595], MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318], CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029], SQSTM1 (sequestosome 1) [NCBI Gene 8878], CDKN1B (cyclin dependent kinase inhibitor 1B) [NCBI Gene 1027], CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026], DDIT3 (DNA damage inducible transcript 3) [NCBI Gene 1649]
- **Diseases:** gastric cancer (MONDO:0001056)

## Full-text entities

- **Genes:** NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, CDKN1B (cyclin dependent kinase inhibitor 1B) [NCBI Gene 1027] {aka CDKN4, KIP1, MEN1B, MEN4, P27KIP1}, SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591] {aka SLUG, SLUGH, SLUGH1, SNAIL2, WS2D}, F2RL1 (F2R like trypsin receptor 1) [NCBI Gene 2150] {aka GPR11, PAR2}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, CST12P (cystatin 12, pseudogene) [NCBI Gene 106478911] {aka Cst, Ctes4, E2}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026] {aka CAP20, CDKN1, CIP1, MDA-6, P21, SDI1}, COPB2 (coat protein complex I subunit beta 2) [NCBI Gene 9276] {aka MCPH19, OPDD, beta'-COP}, CDK6 (cyclin dependent kinase 6) [NCBI Gene 1021] {aka MCPH12, PLSTIRE}, DDIT3 (DNA damage inducible transcript 3) [NCBI Gene 1649] {aka AltDDIT3, C/EBPzeta, CEBPZ, CHOP, CHOP-10, CHOP10}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}
- **Diseases:** edema (MESH:D004487), prostate cancer (MESH:D011471), metastases (MESH:D009362), carcinogenesis (MESH:D063646), gastrointestinal malignancies (MESH:D005770), breast cancer (MESH:D001943), lung adenocarcinoma (MESH:D000077192), colorectal cancer (MESH:D015179), extra-adrenal retroperitoneal tumors (MESH:D012186), urinary tract tumor (MESH:D014571), non-small cell lung cancer (MESH:D002289), lung injury (MESH:D055370), kidney carcinoma (MESH:D007680), TNM (MESH:D008207), small cell lung cancer (MESH:D055752), pancreatic cancer (MESH:D010190), glioma (MESH:D005910), GC (MESH:D013274), bladder cancer (MESH:D001749), lung cancer (MESH:D008175), Cancer (MESH:D009369), ovarian clear cell carcinoma (MESH:D010051), hepatocellular carcinoma (MESH:D006528)
- **Chemicals:** steroid (MESH:D013256), PVDF (MESH:C024865), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MESH:C022616), ethanol (MESH:D000431), streptomycin (MESH:D013307), propidium iodide (MESH:D011419), ethylene diamine tetraacetic acid (MESH:D004492), DMSO (MESH:D004121), Triton X-100 (MESH:D017830), Tween-20 (MESH:D011136), penicillin (MESH:D010406), H2O2 (MESH:D006861), NaCl (MESH:D012965), Hematoxylin (MESH:D006416), crystal violet (MESH:D005840), DAB (MESH:C000469), CO2 (MESH:D002245), MTT (MESH:C070243), sodium deoxycholate (MESH:D003840), SDS (MESH:D012967), lipid (MESH:D008055), fatty acid (MESH:D005227), TRIzol (MESH:C411644), biotin (MESH:D001710), citric acid (MESH:D019343), polyoxymethylene (MESH:C010102), DMEM (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MKN-45 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0434), AGS — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0139)

## Full text

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## Figures

17 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12867441/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12867441/full.md

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Source: https://tomesphere.com/paper/PMC12867441