# Shared latent genetic liability across fibromyalgia and psychiatric traits: Novel insights from genomic structural equation modeling

**Authors:** Liling Lin, Yankai Li, Fengtao Ji, Jianwei Lin, Mengyi Zhu, Diefei Liang, Minghui Cao, Ganglan Fu, Yanni Fu, Renato Polimanti, Renato Polimanti, Renato Polimanti, Renato Polimanti, Renato Polimanti

PMC · DOI: 10.1371/journal.pgen.1012034 · PLOS Genetics · 2026-01-23

## TL;DR

This study identifies a shared genetic factor linking fibromyalgia, insomnia, depression, and anxiety, revealing insights into their common biological pathways and potential treatment targets.

## Contribution

The study introduces a novel shared genetic factor (mvFibroPsych) linking fibromyalgia and psychiatric traits, supported by genomic and neurobiological evidence.

## Key findings

- Strong genetic correlations (rg = 0.55–0.84) were found among fibromyalgia, insomnia, depression, and anxiety.
- mvFibroPsych was linked to synaptic function pathways and brain structure integrity, including the splenium of the corpus callosum.
- Five proteins and CD40 were identified as potential targets related to the shared genetic factor.

## Abstract

Fibromyalgia, insomnia, depression, and anxiety share common clinical comorbidities, but their underlying genetic architecture and mechanism remain unclear.

We conducted phenotype-specific Genome-wide association study (GWAS) meta-analyses for fibromyalgia, insomnia, depression, and anxiety, respectively. Genomic structural equation modeling was employed to identify a shared genetic factor (mvFibroPsych). Lead SNPs and associated genes were annotated using Functional Mapping and Annotation (FUMA), followed by gene-set and tissue enrichment analyses. The Latent Causal Variable (LCV) method was utilized to identify modifiable risk factors and phenotypes influenced by mvFibroPsych. Additionally, brain-wide and proteome-wide Mendelian randomization (MR) analyses were applied to explore brain regions and biomarkers associated with mvFibroPsych. Multi-layer molecular quantitative trait locus (QTL) analyses were conducted for mechanistic insights into mvFibroPsych.

Strong genetic correlations were observed among the four phenotypes (rg = 0.55–0.84), with excellent model fit for the common factor [comparative fit index (CFI) = 0.999, standardized root mean square residual (SRMR) = 0.015]. The mvFibroPsych GWAS identified 49 lead SNPs across 43 loci, including 32 novel loci. Gene prioritization revealed 342 protein-coding genes, and pathway analysis indicated enrichment in synaptic function pathway. LCV identified 133 phenotypes causally linked to mvFibroPsych. Brain-wide MR found fractional anisotropy in the splenium of the corpus callosum to be inversely associated with mvFibroPsych. Proteome-wide MR identified five proteins significantly associated with mvFibroPsych, while multi-layer brain QTL analysis prioritized CD40 as a potential target.

This study provides strong evidence for a shared genetic factor underlying fibromyalgia, insomnia, depression, and anxiety, linked to synaptic function, brain structure integrity, and neuroinflammatory pathways.

Fibromyalgia, insomnia, depression, and anxiety are common health conditions that often occur together, but the genetic factors that connect them remain poorly understood. In this study, we combined data from large-scale genetic studies of these four conditions to identify shared genetic influences. Our analysis revealed a common genetic factor (mvFibroPsych) that underlies these conditions. We identified key genes and pathways, including synaptic function, which may play a role in their shared biological mechanisms. Additionally, we discovered brain region and proteins associated with this latent genetic factor, including markers of brain structure and inflammation. These findings highlight potential areas for developing new treatments targeting these interconnected conditions. By providing insights into how genetic and biological factors contribute to this underlying shared genetic component, our research paves the way for improving diagnosis and treatment for millions of people affected by these overlapping conditions.

## Linked entities

- **Proteins:** CD40 (CD40 molecule)
- **Diseases:** fibromyalgia (MONDO:0005546), insomnia (MONDO:0013600), depression (MONDO:0002050), anxiety (MONDO:0005618)

## Full-text entities

- **Genes:** SLC12A5 (solute carrier family 12 member 5) [NCBI Gene 57468] {aka DEE34, EIEE34, EIG14, KCC2, hKCC2}, OTOA (otoancorin) [NCBI Gene 146183] {aka CT108, DFNB22}, FURIN (furin, paired basic amino acid cleaving enzyme) [NCBI Gene 5045] {aka FUR, PACE, PCSK3, SPC1}, AREL1 (apoptosis resistant E3 ubiquitin protein ligase 1) [NCBI Gene 9870] {aka FIEL1, KIAA0317}, VWC2 (von Willebrand factor C domain containing 2) [NCBI Gene 375567] {aka PSST739, UNQ739}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, BPTF (bromodomain PHD finger transcription factor) [NCBI Gene 2186] {aka FAC1, FALZ, NEDDFL, NURF301}, AMZ1 (archaelysin family metallopeptidase 1) [NCBI Gene 155185], HSPA1A (heat shock protein family A (Hsp70) member 1A) [NCBI Gene 3303] {aka HEL-S-103, HSP70, HSP70-1, HSP70-1A, HSP70-2, HSP70.1}, BTN3A2 (butyrophilin subfamily 3 member A2) [NCBI Gene 11118] {aka BT3.2, BTF4, BTN3.2, CD277}, AP2B1 (adaptor related protein complex 2 subunit beta 1) [NCBI Gene 163] {aka ADTB2, AP105B, AP2-BETA, CLAPB1}, UBE2L6 (ubiquitin conjugating enzyme E2 L6) [NCBI Gene 9246] {aka RIG-B, UBCH8}, TMEM258 (transmembrane protein 258) [NCBI Gene 746] {aka C11orf10, Kud, Kuduk}, ARHGAP19 (Rho GTPase activating protein 19) [NCBI Gene 84986] {aka CMT2KK}
- **Diseases:** affective dysregulation (MESH:D021081), anxiety disorder (MESH:D001008), urinary tract/kidney infection (MESH:C566906), depression (MESH:D003866), psych disorders (MESH:D009358), inflammation (MESH:D007249), mood disorders (MESH:D019964), anxiety (MESH:D001007), Back pain (MESH:D001416), Insomnia (MESH:D007319), gSEM (MESH:D004195), structural brain abnormalities (MESH:D001927), pain (MESH:D010146), autoimmune and neurodegenerative diseases (MESH:D019636), Psychiatric (MESH:D001523), neuroinflammation (MESH:D000090862), HEIDI (MESH:D005547), frailty (MESH:D000073496), syncope (MESH:D013575), synovitis (MESH:D013585), musculoskeletal pain (MESH:D059352), Fibromyalgia (MESH:D005356), MDD (MESH:D003865), urinary tract infections (MESH:D014552), substance use (MESH:D019966), tenosynovitis (MESH:D013717), chronic pain (MESH:D059350), DVT (MESH:D020246), IDPs (MESH:C564543), fatigue (MESH:D005221)
- **Chemicals:** alcohol (MESH:D000438), water (MESH:D014867), chloride (MESH:D002712), 25-00036R3 (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs6424719, rs59608961, rs6459268, rs4940514, rs979343, rs4865477, rs667255, rs7067621, rs17797882, rs56132815, rs61023573, rs6783689, rs1245129, rs139332433, rs150011668

## Full text

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## Figures

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## References

63 references — full list in the complete paper: https://tomesphere.com/paper/PMC12867332/full.md

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Source: https://tomesphere.com/paper/PMC12867332