# Fluoxetine minimally affects hearing loss but induces gene expression changes in the cochlear nuclei after noise exposure

**Authors:** Hyun-Ju An, Sujin Choi, Soonchul Lee, Hyunjeong Yeo, So Young Kim

PMC · DOI: 10.1371/journal.pone.0341746 · PLOS One · 2026-02-03

## TL;DR

Fluoxetine does not restore hearing after noise damage but changes gene activity in the brain's hearing center.

## Contribution

Fluoxetine induces specific gene expression changes in the cochlear nuclei after noise exposure, unrelated to hearing recovery.

## Key findings

- Fluoxetine did not restore cochlear structure or hearing thresholds after noise exposure.
- Fluoxetine altered gene expression in the ventral cochlear nuclei, including upregulation of Mal and Fos.
- Extracellular baskets around cochlear ribbon synapses were reduced in noise-exposed rats, unaffected by fluoxetine.

## Abstract

This study investigated the effects of fluoxetine on noise-induced injuries to the cochlea and auditory nerve, with a focus on its impact on perineuronal nets (PNNs) and gene expression changes in the ventral cochlear nuclei (VCN).

Sprague-Dawley rats were exposed to white noise at 115 dB SPL for 3 hours per day over 3 weeks. After measuring auditory brainstem response (ABR) thresholds, rats were treated with fluoxetine (10 mg/kg) for 19 days. Four groups were included (vehicle, fluoxetine, noise + vehicle, and noise + fluoxetine; n = 10 per group). ABR measurements, analysis of extracellular baskets in cochlear ribbon synapses and PNNs, and RNA sequencing of the VCN were performed.

Following fluoxetine treatment, noise-exposed rats (noise + fluoxetine group) showed hearing thresholds comparable to those in the noise + vehicle group. Both noise-exposed groups exhibited cochlear hair cell loss and disorganization. Extracellular baskets surrounding cochlear ribbon synapses were significantly reduced in noise + vehicle rats and were not restored in noise + fluoxetine rats. Aggrecan expression in the VCN was reduced in the noise + fluoxetine group. RNA sequencing revealed upregulation of genes including Mal, Fos, Rapgef3, Papss2, Adamts4, and Heph, and downregulation of genes such as Pde5a, Kcnma1, Nr4a1, Dlgap3, Slc18a2, and Dgkg.

Fluoxetine exerted only modest, 4 kHz‑restricted improvements in ABR thresholds and did not restore cochlear structure or normal hearing following noise‑induced hearing loss. However, it induced distinct transcriptional alterations in the VCN and modulated the extracellular environment, suggesting a potential role in neural remodeling rather than direct auditory restoration.

## Linked entities

- **Genes:** MAL (mal, T cell differentiation protein (MAL blood group)) [NCBI Gene 4118], FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353], RAPGEF3 (Rap guanine nucleotide exchange factor 3) [NCBI Gene 10411], PAPSS2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2) [NCBI Gene 9060], ADAMTS4 (ADAM metallopeptidase with thrombospondin type 1 motif 4) [NCBI Gene 9507], HEPH (hephaestin) [NCBI Gene 9843], PDE5A (phosphodiesterase 5A) [NCBI Gene 8654], KCNMA1 (potassium calcium-activated channel subfamily M alpha 1) [NCBI Gene 3778], NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164], DLGAP3 (DLG associated protein 3) [NCBI Gene 58512], SLC18A2 (solute carrier family 18 member A2) [NCBI Gene 6571], DGKG (diacylglycerol kinase gamma) [NCBI Gene 1608], acan.L (aggrecan L homeolog) [NCBI Gene 108710307]
- **Chemicals:** fluoxetine (PubChem CID 3386)

## Full-text entities

- **Genes:** Ptprs (protein tyrosine phosphatase, receptor type, S) [NCBI Gene 25529] {aka Larptp2, Ptprd, Ptpsigma, Ptpsigma., R-PTP-S, R-PTP-sigma}, Pde5a (phosphodiesterase 5A) [NCBI Gene 171115] {aka PDE5A2}, C1qtnf3 (C1q and TNF related 3) [NCBI Gene 294806] {aka Adim}, Slc18a2 (solute carrier family 18 member A2) [NCBI Gene 25549] {aka MNAT, VMAT-2, VMAT2}, Ntrk2 (neurotrophic tyrosine kinase, receptor, type 2) [NCBI Gene 18212] {aka GP145-TrkB/GP95-TrkB, Tkrb, trk-B, trkB}, Kcnma1 (potassium calcium-activated channel subfamily M alpha 1) [NCBI Gene 83731] {aka BKCA alpha, BKCa, KCNMA1b, KCNMA1c, KCa1.1, Kcnma}, Adamts4 (ADAM metallopeptidase with thrombospondin type 1 motif, 4) [NCBI Gene 66015], Mal (mal, T-cell differentiation protein) [NCBI Gene 25263] {aka MALGENE}, Cd74 (CD74 molecule) [NCBI Gene 25599] {aka INVG34}, Dgkg (diacylglycerol kinase, gamma) [NCBI Gene 25666] {aka DGK-III, DGKIII, Dagk3}, Acan (aggrecan) [NCBI Gene 11595] {aka Agc, Agc1, CSPCP, Cspg1, b2b183Clo, cmd}, Pvalb (parvalbumin) [NCBI Gene 25269] {aka PALB1, Pva}, Adcyap1 (adenylate cyclase activating polypeptide 1) [NCBI Gene 24166] {aka Pacap}, Nsmaf (neutral sphingomyelinase activation associated factor) [NCBI Gene 353233] {aka FAN}, Ntrk2 (neurotrophic receptor tyrosine kinase 2) [NCBI Gene 25054] {aka RATTRKB1, TRKB1, Tkrb, trk-B, trkB}, Rapgef3 (Rap guanine nucleotide exchange factor 3) [NCBI Gene 59326] {aka Epac}, Bcan (brevican) [NCBI Gene 25393] {aka ALPBRE, BEHAB}, Npy (neuropeptide Y) [NCBI Gene 24604] {aka NPY02, RATNPY, RATNPY02}, Bdnf (brain-derived neurotrophic factor) [NCBI Gene 24225], Cnnm1 (cyclin and CBS domain divalent metal cation transport mediator 1) [NCBI Gene 309387], Slc4a7 (solute carrier family 4 member 7) [NCBI Gene 117955] {aka NBC3, NBCn1}, Fos (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 314322] {aka c-fos}, Glra1 (glycine receptor, alpha 1) [NCBI Gene 25674] {aka GLYRA1}, Ccl5 (C-C motif chemokine ligand 5) [NCBI Gene 81780] {aka Rantes, Scya5}, Sox2 (SRY (sex determining region Y)-box 2) [NCBI Gene 20674] {aka Sox-2, lcc, ysb}, Nr4a1 (nuclear receptor subfamily 4, group A, member 1) [NCBI Gene 79240] {aka HMR, Ngfi-b, Nur77}, Atp2b4 (ATPase plasma membrane Ca2+ transporting 4) [NCBI Gene 29600] {aka PMCA4}, Cyp2u1 (cytochrome P450, family 2, subfamily u, polypeptide 1) [NCBI Gene 310848], Bdnf (brain derived neurotrophic factor) [NCBI Gene 12064], Mblac1 (metallo-beta-lactamase domain containing 1) [NCBI Gene 304346] {aka RGD1306932}, Nts (neurotensin) [NCBI Gene 299757], Bcan (brevican) [NCBI Gene 12032] {aka Cspg7}, Sox2 (SRY-box transcription factor 2) [NCBI Gene 499593] {aka RGD1565646}, Oxsm (3-oxoacyl-ACP synthase, mitochondrial) [NCBI Gene 289934] {aka RGD1311092}, Heph (hephaestin) [NCBI Gene 117240], Pnn (pinin, desmosome associated protein) [NCBI Gene 368070], Papss2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2) [NCBI Gene 294103], Tefm (transcription elongation factor, mitochondrial) [NCBI Gene 287554] {aka RGD1306595}, Nos1 (nitric oxide synthase 1) [NCBI Gene 24598] {aka bNOS}, Dlgap3 (DLG associated protein 3) [NCBI Gene 286923] {aka DAP-3, Dap3, SAPAP3}, Acan (aggrecan) [NCBI Gene 58968] {aka Agc, Agc1}
- **Diseases:** depressive (MESH:D003866), injuries to (MESH:D014947), auditory nerve injury (MESH:D000080902), inflammation (MESH:D007249), VCN (MESH:D006555), sensory deficits (MESH:D012678), neural degeneration (MESH:D009410), neural damage (MESH:D015441), hearing loss (MESH:D034381), cochlear damage (MESH:D015834)
- **Chemicals:** EDTA (MESH:D004492), ethanol (MESH:D000431), potassium (MESH:D011188), hematoxylin (MESH:D006416), chondroitin (MESH:D002807), xylazine (MESH:D014991), Zoletil (MESH:C006131), DAB (MESH:C000469), PBS (MESH:D007854), serotonin (MESH:D012701), paraffin (MESH:D010232), CO2 (MESH:D002245), Fluoxetine (MESH:D005473), NO (MESH:D009614), N-Methyl-D-aspartic acid (MESH:D016202), TRIzol (MESH:C411644), Alexa Fluor 594 (-)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090]

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## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12867223/full.md

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Source: https://tomesphere.com/paper/PMC12867223