Response to the letter to the editor: Appraisal of suspicious for malignancy cytology: nuclear characteristics deserve special attention in reported cytology analysis - real-world scenario cohort in thyroidology
Fabiane Carvalho Macedo, Ricardo Luiz Costantin Delfim, Fernanda Vaisman

Abstract
Genes, proteins, chemicals, diseases, species, mutations and cell lines named across the full text — each resolved to its canonical identifier and authoritative record.
Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.
Taxonomy
TopicsThyroid Cancer Diagnosis and Treatment · Thyroid Disorders and Treatments · Head and Neck Cancer Studies
Dear Editor,
We thank Dr Ilker Sengul and Dr Demet Sengul for their thoughtful and insightful comments ^(1)^ on our recently published manuscript, “In suspicious for malignancy thyroid nodule aspirates, nuclei characteristics deserve special attention in reported cytology analysis - real world scenario cohort” ^(2)^. Our study highlights that nuclear features may refine cytological interpretation within the Suspicious for Malignancy (SFM) Bethesda category, and we welcome the opportunity to address the points raised
Regarding the exceptionally high risk of malignancy (ROM) observed the correspondents correctly noted the remarkably high risk of malignancy (98%) reported in our SFM cohort, exceeding the mean ROM described in the 2023 Bethesda System for Reporting Thyroid Cytopathology (TBSRTC) ^(3)^. As detailed in our Methods and Discussion, this finding reflects the “real-world surgical series” nature of our cohort, in which all SFM nodules were managed surgically and confirmed histologically. This introduces a natural selection bias favoring malignancy confirmation, similar to other surgical cohorts in the literature reporting ROMs between 91% and 100% ^(4)^. Therefore, the elevated ROM observed should not be interpreted as a discrepancy in diagnostic thresholds but as a feature of a highly selected, clinically indicated population.
Qualitative versus quantitative analysis of cytological criteria was another raised issue in the letter. We agree that direct slide reassessment and quantitative morphometric analysis might further clarify the weight of each nuclear parameter. Nevertheless, the qualitative review of finalized cytology reports was a deliberate methodological choice, designed to emulate a genuine clinical setting in which treatment decisions rely on written diagnostic impressions. Despite this constraint, our statistical analysis demonstrated that micronucleoli and oval/irregular nuclei were independently associated with malignancy, increasing its likelihood nearly thirteenfold and fivefold, respectively. These findings underscore the robustness of these parameters, even in report-based analyses, and justify future prospective studies with centralized cytopathologic review.
On possible sources of diagnostic bias, we acknowledge the point regarding the potential influence of the operator’s experience. In our study, the aspirates were obtained by a single radiologist with over 25 years of thyroidology experience, which indeed may have contributed to the low false-positive rate and high ROM observed. However, this consistency enhances the internal validity of the findings by minimizing procedural variability. It is also noteworthy that FNAB material was processed and analyzed by multiple cytopathologists across different laboratories, yet the false-positive rate remained only 2%, comparable to rates reported internationally.
Nuclear features and diagnostic thresholds, were our main finding: the diagnostic strength of micronucleoli and irregular/oval nuclei as discriminators of malignancy within the SFM category. As they correctly observed, traditional features such as nuclear grooves and pseudoinclusions, though highly frequent, lacked discriminatory value in our cohort, as they appeared in both benign and malignant cases. This observation reinforces the notion that not all classical features carry equal predictive power, and supports refining cytological emphasis toward those features that better correlate with true malignancy. Additional multicenter, quantitative, and possibly molecularly integrated studies are warranted to determine how many and which nuclear features should be minimally required to ensure diagnostic precision within the SFM category ^(5)^.
Final considerations: we appreciate the correspondence and the shared interest in refining the cytological evaluation of thyroid nodules. Our study reinforces that even in a qualitative, real-world analysis, micronucleoli and nuclear irregularity emerge as highly specific and reproducible markers of malignancy in the SFM Bethesda category. These findings may serve as a suggestion for cytopathologists, especially in settings where molecular testing is not readily available. We thank the authors for their valuable observations, which further highlight the relevance of continuous refinement in thyroid cytopathology and the importance of maintaining close collaboration between pathologists, radiologists, and clinicians.
The reference list from the paper itself. Each links out to its DOI / PubMed record.
- 1Sengul I Sengul D. Comment on suspicious for malignancy cytology: nuclear characteristics deserve special attention in reported cytology analysis - real-world scenario cohort in thyroidology Arch Endocrinol Metab 2026702 e 26000210.20945/2359-4292-2026-0002. · doi ↗
- 2Macedo FC Delfim RLC Vaisman F. In suspicious for malignancy thyroid nodule aspirates, nuclei characteristics deserves special attention in reported cytology analysis - real world scenario cohort Arch Endocrinol Metab 2025 Sep 30695 e 24048110.20945/2359-4292-2024-0481.41026840 PMC 12483352 · doi ↗ · pubmed ↗
- 3Ali SZ Baloch ZW Cochand-Priollet B Schmitt FC Vielh P Vander Laan PA. The 2023 Bethesda System for Reporting Thyroid Cytopathology Thyroid 2023 Sep 3391039104410.1089/thy.2023.0141.37427847 · doi ↗ · pubmed ↗
- 4Baraf L Avidor Y Bahat Dinur A Yoel U Samueli B Joshua BZ Fraenkel M. Rates of Malignancy in Cytology Indeterminate Thyroid Nodules: A Single Center Surgical Series Isr Med Assoc J 2023 Feb 25214715136841986 · pubmed ↗
- 5Schwertheim S Theurer S Jastrow H Herold T Ting S Westerwick D New insights into intranuclear inclusions in thyroid carcinoma: Association with autophagy and with BRAFV 600E mutation P Lo S One 20191412 e 022619910.1371/journal.pone.022619931841566 PMC 6913918 · doi ↗ · pubmed ↗
