# Temporal Transcriptional Regulation of Human Neuronal Differentiation via Forward Programming

**Authors:** Lingling Zhu, Weiguang Wang, Jian Zhang, Lei Liu, Minpeng Huang, Lei Diao, Shuang Feng, Qiong Yang, Hao Qiu, Bing Pan, Renee A Reijo Pera, Ji Liu, Ninuo Xia, Fang Fang

PMC · DOI: 10.1002/advs.202510641 · Advanced Science · 2025-11-23

## TL;DR

The study compares two methods of human neuronal differentiation and identifies key genes that control the timing of neurogenesis and maturation.

## Contribution

The paper identifies transcriptional regulators that control the timing of neuronal differentiation and maturation in human stem cells.

## Key findings

- OLIG family transcription factors promote cell cycle exit via NOTCH signaling and delay neurogenesis when absent.
- NEUROD2 overexpression accelerates neuronal maturation in both differentiation systems by activating maturation gene modules.

## Abstract

Human pluripotent stem cells (hPSCs) serve as a powerful model for studying human neuronal differentiation, yet the temporal control of this process remains poorly understood. This study compares two differentiation systems with distinct timing of differentiation: transcription factor (TF)‐induced forward programming and stepwise cellular differentiation by dual‐SMAD (DS) inhibition. The analyses reveal that divergent cellular trajectories drive distinct neurogenesis timing. Multi‐omic analysis identifies crucial gene regulatory networks (GRNs) that govern cell fate determination and timing control. Perturbation of these GRNs modulates the timing of neurogenesis and neuronal maturation. Specifically, OLIG family TFs, enriched in the TF‐induced system, promoted cell cycle exit via NOTCH signaling regulation; their ablation delays neurogenesis in this system. Additionally, NEUROD2 overexpression after neurogenesis accelerated in vitro neuronal maturation in both TF‐ and DS‐induced differentiating cells by enhanced activation of maturation gene modules. These findings elucidate transcriptional mechanisms governing differentiation timing and provide a framework for rationally designing timing‐controlled in vitro differentiation strategies.

Single‐cell profiling of TF‐induced forward programming versus stepwise dual‐SMAD differentiation reveals that divergent trajectories set the pace of neurogenesis. OLIG TFs advance cell‐cycle exit via NOTCH modulation, while NEUROD2 later accelerates maturation. The study elucidates transcriptional mechanisms governing differentiation timing, providing a reference for rationally designing timing‐controlled in vitro differentiation strategies.

## Linked entities

- **Genes:** olig (oligodendrocyte transcription factor) [NCBI Gene 100303527], Notch (neurogenic locus notch homolog) [NCBI Gene 100616083], NEUROD2 (neuronal differentiation 2) [NCBI Gene 4761]

## Full-text entities

- **Genes:** NEUROD2 (neuronal differentiation 2) [NCBI Gene 4761] {aka DEE72, EIEE72, NDRF, bHLHa1}
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12866710/full.md

## References

147 references — full list in the complete paper: https://tomesphere.com/paper/PMC12866710/full.md

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Source: https://tomesphere.com/paper/PMC12866710