# c-JUN enhances CRISPR knockin anti-B7-H3 CAR T cell function in small cell lung cancer and thoracic SMARCA4-deficient undifferentiated tumors

**Authors:** Hyatt Balke-Want, Vimal Keerthi, Maria Del Carmen Arenas, Yiyun Chen, Meena Malipatlolla, Dorota D. Klysz, Peng Xu, Katie Ho, Kyle Asano, David Stahl, Jing Huang, Aidan Retherford, Sunny Patel, Carley Fowler, Lukas Maas, Nikolaos Gkitsas-Long, Qiaoshi Jiang, Xikun Liu, Roland Ullrich, Julie George, Sabine Heitzeneder, Ramya Tunuguntla, Julien Sage, Elena Sotillo, Crystal L. Mackall, Steven A. Feldman

PMC · DOI: 10.1016/j.xcrm.2025.102549 · Cell Reports Medicine · 2026-01-20

## TL;DR

Researchers improved CAR T cell therapy for aggressive lung cancers by combining a new target (B7-H3) with a genetic modification (c-JUN) to overcome tumor resistance.

## Contribution

A novel CRISPR-based CAR T cell design combining B7-H3 targeting and c-JUN expression to enhance anti-tumor activity in SCLC and SMARCA4-deficient tumors.

## Key findings

- B7-H3 is a viable CAR T cell target in SCLC and thoracic SMARCA4-deficient undifferentiated tumors.
- c-JUN enhances CAR T cell function by inducing cytokines and overcoming TGF-β1 suppression.
- Non-viral CRISPR knockin of c-JUN+B7-H3 CAR is feasible at clinical scale.

## Abstract

Small cell lung cancer (SCLC), a highly lethal disease, limits T cell responses by downregulating major histocompatibility (MHC) class I molecules. Because chimeric antigen receptor (CAR) T cells are not MHC restricted, they may provide a powerful strategy against SCLC. However, few CAR targets for SCLC are known. Here, we show that B7-H3/CD276 is expressed in SCLC and thoracic SMARCA4-deficient undifferentiated tumors (UTs) that can clinicopathologically mimic SCLC. Thoracic SMARCA4-deficient UTs limit killing by B7-H3 CAR T cells via secretion of transforming growth factor β1 (TGF-β1). To overcome tumor-driven CAR T cell suppression, we knock in c-JUN alongside a B7-H3 CAR into the TRAC locus of primary human T cells utilizing CRISPR-Cas9. Non-viral c-JUN+B7-H3 CAR T cells show enhanced killing of both SCLC cells with low antigen density and thoracic SMARCA4-deficient UTs, providing a platform to address these highly aggressive entities. We also provide evidence that good manufacturing practice (GMP) clinical-scale manufacturing is feasible for c-JUN+B7-H3 CAR T cells.

•B7-H3 can be targeted in SCLC and thoracic SMARCA4-deficient UTs with CAR T cells•TGF-β1 drives resistance in thoracic SMARCA4-deficient UTs•c-JUN enhances killing of B7-H3 CAR T cells by inducing type I/II cytokines•CRISPR knockin of c-JUN+B7-H3 CAR (3.6 kb) is feasible at the clinical scale

B7-H3 can be targeted in SCLC and thoracic SMARCA4-deficient UTs with CAR T cells

TGF-β1 drives resistance in thoracic SMARCA4-deficient UTs

c-JUN enhances killing of B7-H3 CAR T cells by inducing type I/II cytokines

CRISPR knockin of c-JUN+B7-H3 CAR (3.6 kb) is feasible at the clinical scale

Balke-Want et al. show that B7-H3 is an actionable CAR target in SCLC and thoracic SMARCA4-deficient UTs. However, in thoracic SMARCA4-deficient UTs, TGF-β1 suppresses their activity. By engineering CRISPR knockin c-JUN+B7-H3 CAR T cells with combined expression of type I/II cytokines, the authors overcome TGF-β1-mediated suppression.

## Linked entities

- **Genes:** JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725], TRAC (T cell receptor alpha constant) [NCBI Gene 28755]
- **Proteins:** CD276 (CD276 molecule), CD276 (CD276 molecule), TGFB1 (transforming growth factor beta 1)
- **Diseases:** small cell lung cancer (MONDO:0008433)

## Full-text entities

- **Genes:** Smarca4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4) [NCBI Gene 20586] {aka BAF190A, Brg1, HP1-BP72, SNF2beta, SW1/SNF, b2b508.1Clo}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, NEUROD1 (neuronal differentiation 1) [NCBI Gene 4760] {aka BETA2, BHF-1, MODY6, NEUROD, T2D, bHLHa3}, TGFBR2 (transforming growth factor beta receptor 2) [NCBI Gene 7048] {aka AAT3, FAA3, LDS1B, LDS2, LDS2B, MFS2}, Ack (anti-Corynebacterium kutscheri) [NCBI Gene 107482] {aka acm}, DLL3 (delta like canonical Notch ligand 3) [NCBI Gene 10683] {aka SCDO1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, Ccr7 (C-C motif chemokine receptor 7) [NCBI Gene 12775] {aka CC-CKR-7, CCR-7, CD197, Cdw197, Cmkbr7, EBI1}, CD48 (CD48 molecule) [NCBI Gene 962] {aka BCM1, BLAST, BLAST1, MEM-102, SLAMF2, hCD48}, CXADRP1 (CXADR pseudogene 1) [NCBI Gene 653108] {aka CAR, CXADRP}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, SEZ6 (seizure related 6 homolog) [NCBI Gene 124925] {aka BSRPC}, TNFRSF14 (TNF receptor superfamily member 14) [NCBI Gene 8764] {aka ATAR, CD270, HVEA, HVEM, LIGHTR, TR2}, TRAC (T cell receptor alpha constant) [NCBI Gene 28755] {aka IMD7, TCRA, TRCA}, Il2rg (interleukin 2 receptor, gamma chain) [NCBI Gene 16186] {aka CD132, [g]c, gamma(c), gc, p64}, VTCN1 (V-set domain containing T cell activation inhibitor 1) [NCBI Gene 79679] {aka B7-H4, B7H4, B7S1, B7X, B7h.5, PRO1291}, IL31 (interleukin 31) [NCBI Gene 386653] {aka IL-31}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, MYCL (MYCL proto-oncogene, bHLH transcription factor) [NCBI Gene 4610] {aka L-Myc, LMYC, MYCL1, bHLHe38}, Cxcr3 (C-X-C motif chemokine receptor 3) [NCBI Gene 12766] {aka Cd183, Cmkar3}, Jun (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 16476] {aka AP-1, Junc, c-jun}, Nr1i3 (nuclear receptor subfamily 1, group I, member 3) [NCBI Gene 12355] {aka CAR, CAR-beta, Care2, ESTM32, MB67}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, CHKA (choline kinase alpha) [NCBI Gene 1119] {aka CHK, CK, CKI, EK, NEDMIMS}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, NR4A2 (nuclear receptor subfamily 4 group A member 2) [NCBI Gene 4929] {aka HZF-3, IDLDP, NOT, NURR1, RNR1, TINUR}, SEC14L2 (SEC14 like lipid binding 2) [NCBI Gene 23541] {aka C22orf6, SPF, TAP, TAP1}, Rev3l (REV3 like, DNA directed polymerase zeta catalytic subunit) [NCBI Gene 19714] {aka Rev, Rev3, Sez4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, Tbx21 (T-box 21) [NCBI Gene 57765] {aka TBT1, Tbet, Tblym}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Cd276 (CD276 antigen) [NCBI Gene 102657] {aka 6030411F23Rik, B7-H3, B7RP-2, B7h3}, Dhfr (dihydrofolate reductase) [NCBI Gene 13361] {aka 8430436I03Rik}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, POU2F3 (POU class 2 homeobox 3) [NCBI Gene 25833] {aka Epoc-1, OCT-11, OCT11, OTF-11, PLA-1, PLA1}, IL3 (interleukin 3) [NCBI Gene 3562] {aka IL-3, MCGF, MULTI-CSF}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, B2M (beta-2-microglobulin) [NCBI Gene 567] {aka AMYLD6, IMD43, MHC1D4}, ASCL1 (achaete-scute family bHLH transcription factor 1) [NCBI Gene 429] {aka ASH1, HASH1, MASH1, bHLHa46}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725] {aka AP-1, AP1, c-Jun, cJUN, p39}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, CD276 (CD276 molecule) [NCBI Gene 80381] {aka 4Ig-B7-H3, B7-H3, B7H3, B7RP-2}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, RB1 (RB transcriptional corepressor 1) [NCBI Gene 5925] {aka OSRC, PPP1R130, RB, p105-Rb, p110-RB1, pRb}, Cd22 (CD22 antigen) [NCBI Gene 12483] {aka A530093D23, Lyb-8, Lyb8}, Cd38 (CD38 antigen) [NCBI Gene 12494] {aka ADPRC 1, Cd38-rs1, I-19}, MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613] {aka FGLDS1, MODED, MPAPA, MYCNsORF, MYCNsPEP, N-myc}, DHFR (dihydrofolate reductase) [NCBI Gene 1719] {aka DHFR1, DYR}
- **Diseases:** UTs (MESH:D002277), immunodeficient (MESH:D007153), NOD (MESH:D020191), non (MESH:C580335), Cancer (MESH:D009369), B-ALL (MESH:D015452), lung cancer (MESH:D008175), NE (MESH:D018358), toxicity (MESH:D064420), solid (MESH:D018250), NE SCLC (MESH:D055752)
- **Chemicals:** PBS (MESH:D007854), FS (MESH:D005461), MTX (MESH:D008727), isoflurane (MESH:D007530), H2O (MESH:D014867), paraformaldehyde (MESH:C003043), sodium azide (MESH:D019810), Penicillin (MESH:D010406), Streptomycin (MESH:D013307), poly(A) (MESH:D011061), cisplatin (MESH:D002945), Fresolimumab (MESH:C560928), CSM (-), L-glutamine (MESH:D005973), dUTP (MESH:C027078), platinum (MESH:D010984), methanol (MESH:D000432), PI (MESH:D010716)
- **Species:** Adeno-associated virus - 6 (no rank) [taxon 68558], Homo sapiens (human, species) [taxon 9606], Acinetobacter calcoaceticus (species) [taxon 471], Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093]
- **Mutations:** S7D, T2A
- **Cell lines:** H69 — Homo sapiens (Human), Transformed cell line (CVCL_8121), FAB1027P — Homo sapiens (Human), Galactosemia, Transformed cell line (CVCL_L972), CEMENT — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_A9BD), NJH29 — Homo sapiens (Human), Amyotrophic lateral sclerosis 1, Induced pluripotent stem cell (CVCL_8999), SW1271 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_1716), H841 — Homo sapiens (Human), Thoracic SMARCA4-deficient undifferentiated tumor, Cancer cell line (CVCL_1595), H524 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_1568), SCLC — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_0C21)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12866126/full.md

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12866126/full.md

## References

65 references — full list in the complete paper: https://tomesphere.com/paper/PMC12866126/full.md

---
Source: https://tomesphere.com/paper/PMC12866126