# Microbial‐Immune Interplay in CNS Autoimmune Diseases: Lessons from Animal Models and Clinical Studies

**Authors:** Matteo Ceccon, Francesca Ronchi

PMC · DOI: 10.1002/eji.70135 · European Journal of Immunology · 2026-02-02

## TL;DR

This review explores how gut microbes influence the immune system and contribute to autoimmune diseases of the central nervous system, like multiple sclerosis.

## Contribution

The paper synthesizes findings from animal models and clinical studies to highlight the role of the microbiota in CNS autoimmunity.

## Key findings

- Gut microbiota changes can trigger inflammation and immune activation linked to CNS autoimmune diseases.
- Microbial metabolites and antigens modulate host immunity, potentially causing CNS inflammation.
- Future research should focus on causal relationships and molecular mechanisms for clinical translation.

## Abstract

The gut microbiota plays a key role in shaping and educating host immunity, and it may also influence the central nervous system (CNS). Changes in the composition and function of commensal microbes can trigger inflammation and abnormal immune activation, contributing to disorders such as multiple sclerosis (MS), neuromyelitis optica spectrum disorder (NMOSD), myelin oligodendrocyte glycoprotein antibody‐associated disease (MOGAD), autoimmune encephalitis (AIE), neuropsychiatric lupus (NPSLE), and narcolepsy. The microbiota has been linked to disease risk or protection via the production of its metabolites, products, or antigens that could modulate host immune responses, consequently causing CNS inflammation. This review highlights patient studies investigating the mechanisms through which the human microbiota is involved in CNS autoimmunity by modulating the host immune system. Future research should focus on defining causal relationships, elucidating molecular mechanisms, and addressing the different members of the intestinal microbiota to translate microbiota modulation into clinical interventions for CNS autoimmune diseases.

Mechanism of action of the intestinal microbiota on CNS autoimmune diseases. Environmental factors shape gut microbiota composition; dysbiosis alters microbial metabolites and antigenic signals. These modulate innate and adaptive immunity, affect barrier integrity, and influence CNS‐resident cells such as microglia and astrocytes, contributing to immune‐mediated CNS pathology. Multiple sclerosis (MS), neuromyelitis optica spectrum disorder (NMOSD), myelin oligodendrocyte glycoprotein antibody‐associated disease (MOGAD), autoimmune encephalitis, and neuropsychiatric lupus (NPSLE). The image provided is free of copyright restrictions. Generated with BioRender.

## Linked entities

- **Diseases:** multiple sclerosis (MONDO:0005301), neuromyelitis optica spectrum disorder (MONDO:0019100), myelin oligodendrocyte glycoprotein antibody‐associated disease (MONDO:1040024), autoimmune encephalitis (MONDO:0020640)

## Full-text entities

- **Genes:** IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, Igha (immunoglobulin heavy constant alpha) [NCBI Gene 238447] {aka IgA, Igh-2}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Emb (embigin) [NCBI Gene 13723] {aka Gp70}, RASGRP2 (RAS guanyl releasing protein 2) [NCBI Gene 10235] {aka CALDAG-GEFI, CDC25L}, Nlrp3 (NLR family, pyrin domain containing 3) [NCBI Gene 216799] {aka AGTAVPRL, AII/AVP, Cias1, FCAS, FCU, MWS}, Il23a (interleukin 23, alpha subunit p19) [NCBI Gene 83430] {aka IL-23, p19}, Mrln (myoregulin) [NCBI Gene 69563] {aka 2310015B20Rik, Linc-RAM, Mln}, Cd27 (CD27 antigen) [NCBI Gene 21940] {aka S152, Tnfrsf7, Tp55}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, Il12b (interleukin 12b) [NCBI Gene 16160] {aka Il-12b, Il-12p40, Il12p40, p40}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, NRXN1 (neurexin 1) [NCBI Gene 9378] {aka Hs.22998, PTHSL2, SCZD17}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Ahr (aryl-hydrocarbon receptor) [NCBI Gene 11622] {aka Ah, Ahh, Ahre, In, bHLHe76}, Aoc1 (amine oxidase, copper-containing 1) [NCBI Gene 76507] {aka 1600012D06Rik, Abp1, DAO}, KITLG (KIT ligand) [NCBI Gene 4254] {aka DCUA, DFNA69, FPH2, FPHH, KL-1, Kitl}, Plp1 (proteolipid protein (myelin) 1) [NCBI Gene 18823] {aka DM20, Plp, jimpy, jp, msd, rsh}, MOBP (myelin associated oligodendrocyte basic protein) [NCBI Gene 4336], Mr1 (major histocompatibility complex, class I-related) [NCBI Gene 15064] {aka H2ls}, Cxcr3 (C-X-C motif chemokine receptor 3) [NCBI Gene 12766] {aka Cd183, Cmkar3}, KIR2DL4 (killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4) [NCBI Gene 3805] {aka CD158D, G9P, KIR-103AS, KIR-2DL4, KIR103, KIR103AS}, Ifnb1 (interferon beta 1, fibroblast) [NCBI Gene 15977] {aka IFN-beta, IFNB, If1da1, Ifb}, Mal (myelin and lymphocyte protein, T cell differentiation protein) [NCBI Gene 17153] {aka Mpv17, Vip17}, H2-K1 (histocompatibility 2, K1, K region) [NCBI Gene 14972] {aka H-2K, H-2K(d), H2-D1, H2-K, K-f}, B2m (beta-2 microglobulin) [NCBI Gene 12010] {aka Ly-m11, beta2-m, beta2m}, Aqp4 (aquaporin 4) [NCBI Gene 11829] {aka WCH4}, MBP (myelin basic protein) [NCBI Gene 4155], Il25 (interleukin 25) [NCBI Gene 140806] {aka IL-17e, IL-25, Il17e}, S100B (S100 calcium binding protein B) [NCBI Gene 6285] {aka NEF, S100, S100-B, S100beta}, Lyve1 (lymphatic vessel endothelial hyaluronan receptor 1) [NCBI Gene 114332] {aka 1200012G08Rik, Crsbp-1, Lyve-1, Xlkd1}, Tnfrsf1a (tumor necrosis factor receptor superfamily, member 1a) [NCBI Gene 21937] {aka CD120a, FPF, TNF-R, TNF-R-I, TNF-R1, TNF-R55}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Il21 (interleukin 21) [NCBI Gene 60505] {aka IL-21}, CRYAB (crystallin alpha B) [NCBI Gene 1410] {aka CMD1II, CRYA2, CTPP2, CTRCT16, HEL-S-101, HSPB5}, Mog (myelin oligodendrocyte glycoprotein) [NCBI Gene 17441] {aka B230317G11Rik}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, F11r (F11 receptor) [NCBI Gene 16456] {aka 9130004G24, ESTM33, JAM, JAM-1, JAM-A, Jcam}, CNTN2 (contactin 2) [NCBI Gene 6900] {aka AXT, EPEO5, FAME5, TAG-1, TAX, TAX1}, Itgb2 (integrin beta 2) [NCBI Gene 16414] {aka 2E6, Cd18, LAD, LCAMB, Lfa1, MF17}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, HCRT (hypocretin neuropeptide precursor) [NCBI Gene 3060] {aka NRCLP1, OX, PPOX}, Apoh (apolipoprotein H) [NCBI Gene 11818] {aka B2GPI, beta-2-GPI, beta2-GPI}, HCRTR2 (hypocretin receptor 2) [NCBI Gene 3062] {aka ORXR2, OX2R, OXR2}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Csf2 (colony stimulating factor 2 (granulocyte-macrophage)) [NCBI Gene 12981] {aka CSF, Csfgm, GMCSF, Gm-CSf, MGI-IGM}, Dao (D-amino acid oxidase) [NCBI Gene 13142] {aka DAAO, DAMOX, Dao-1, Dao1}, Saa (serum amyloid A cluster) [NCBI Gene 111345], Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, PLP1 (proteolipid protein 1) [NCBI Gene 5354] {aka GPM6C, HLD1, MMPL, PLP, PLP/DM20, PMD}, Serpinb1-ps1 (serine (or cysteine) peptidase inhibitor, clade B, member 1, pseudogene) [NCBI Gene 282665] {aka EID, ovalbumin}, Pycard (PYD and CARD domain containing) [NCBI Gene 66824] {aka 9130417A21Rik, Asc, CARD5, TMS-1, TNS1, masc}, Ccl20 (C-C motif chemokine ligand 20) [NCBI Gene 20297] {aka CKb4, LARC, MIP-3A, MIP-3[a], MIP3A, ST38}, Rasgrp2 (RAS, guanyl releasing protein 2) [NCBI Gene 19395] {aka CDC25L, CalDAG-GEFI, Caldaggef1}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, MAG (myelin associated glycoprotein) [NCBI Gene 4099] {aka GMA, S-MAG, SIGLEC-4A, SIGLEC4, SIGLEC4A, SPG75}, AQP4 (aquaporin 4) [NCBI Gene 361] {aka MIWC, MLC4, WCH4, hAQP4}
- **Diseases:** inflammatory demyelination (MESH:D020277), cerebellar symptoms (MESH:D002526), transverse myelitis (MESH:D009188), dysbiosis (MESH:D064806), ataxia (MESH:D001259), relapsing-remitting multiple sclerosis (MESH:D020529), daytime sleepiness (MESH:D012893), cognitive deficits (MESH:D003072), cough (MESH:D003371), runny nose (MESH:D000086722), cord-only lesions (MESH:D013118), neurological disorder (MESH:D009461), diabetic (MESH:D003920), type 1 narcolepsyHCRT (MESH:D003922), damage (MESH:D020263), mood disorders (MESH:D019964), CNS inflammation (MESH:D007249), facial palsy (MESH:D005158), MS[89 (OMIM:613916), cataplexy (MESH:D002385), fever (MESH:D005334), MS (MESH:D009103), progressive/ (MESH:D018450), axonal loss (MESH:D012183), vertigo (MESH:D014717), neuropsychiatric symptoms (MESH:D001523), autoimmune and neurodegenerative disease (MESH:D019636), optic neuritis (MESH:D009902), NMDAR encephalitis (MESH:D060426), neuroinflammation (MESH:D000090862), spasticity (MESH:D009128), ADEM (MESH:D004673), acquired demyelinating syndrome (MESH:D003711), diplopia (MESH:D004172), AIE (MESH:D020274), Autoimmune Diseases (MESH:D001327), visual and sensory impairment (MESH:D014786), ovarian teratoma (MESH:C562731), Narcolepsy (MESH:D009290), hyperreflexia (MESH:D012021), NMO (MESH:D009471), ischemic (MESH:D002545), epilepsy (MESH:D004827), CMV (MESH:D003586), primary progressive multiple sclerosis (MESH:D020528), EAE (MESH:D004681), hyperactivity (MESH:D006948), NT1 (MESH:C563534), SLE (MESH:D008180), age (MESH:D019588), tumor (MESH:D009369), Neuron (MESH:D009410), seizures (MESH:D012640), fatigue (MESH:D005221), neuropsychiatric lupus (MESH:D020945), white matter lesions (MESH:D056784)
- **Chemicals:** oxygen (MESH:D010100), carbohydrate (MESH:D002241), GABA (MESH:D005680), fluorescein (MESH:D019793), FITC (MESH:D016650), arginine (MESH:D001120), IMQ (MESH:D000077271), LPS (MESH:D008070), isovaleric acid (MESH:C008216), LCA (MESH:D008095), bile acid (MESH:D001647), propionic acid (MESH:C029658), pyruvate (MESH:D019289), tryptophan (MESH:D014364), phytate (MESH:D010833), AA (MESH:D000596), DCA (MESH:D003840), Glutamate (MESH:D018698), S-adenosylmethionine (MESH:D012436), polyamines (MESH:D011073), glutathione (MESH:D005978), lipid (MESH:D008055), SDS (MESH:D012967), D-lactic acid (MESH:D019344), SCFA (MESH:D005232), CFSE (MESH:C087165), fructose (MESH:D005632), D-Lac (-), Nitric oxide (MESH:D009569), glycolipids (MESH:D006017), 17-beta-estradiol (MESH:D004958), sphingolipid (MESH:D013107), Cuprizone (MESH:D003471)
- **Species:** Bifidobacterium longum (species) [taxon 216816], Mediterraneibacter torques (species) [taxon 33039], Acinetobacter calcoaceticus (species) [taxon 471], Mus musculus (house mouse, species) [taxon 10090], Adeno-associated virus - 4 (no rank) [taxon 57579], Human betaherpesvirus 5 (no rank) [taxon 10359], Limosilactobacillus fermentum (species) [taxon 1613], Ruthenibacterium lactatiformans (species) [taxon 1550024], Streptococcus (genus) [taxon 1301], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Roseburia sp. (species) [taxon 2049040], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Bifidobacterium pseudocatenulatum (species) [taxon 28026], Dialister (genus) [taxon 39948], Allobaculum stercoricanis (species) [taxon 174709], Escherichia coli (E. coli, species) [taxon 562], Hungatella hathewayi (species) [taxon 154046], Anaerotruncus (genus) [taxon 244127], Lachnoclostridium (genus) [taxon 1506553], Akkermansia muciniphila (species) [taxon 239935], Parabacteroides distasonis (species) [taxon 823], Veillonella tobetsuensis (species) [taxon 1110546], Clostridium perfringens (species) [taxon 1502], Segatella copri (species) [taxon 165179], Pseudoramibacter (genus) [taxon 113286], Enterocloster aldenensis (species) [taxon 358742], gut metagenome (species) [taxon 749906], Faecalibacterium prausnitzii (species) [taxon 853], Christensenella minuta (species) [taxon 626937], Negativibacillus (genus) [taxon 1980693], Human betaherpesvirus 6 (species) [taxon 10368], Aspergillus (genus) [taxon 5052], Eisenbergiella tayi (species) [taxon 1432052], Homo sapiens (human, species) [taxon 9606], Gemmiger formicilis (species) [taxon 745368], Bacteroides (genus) [taxon 816], Roseburia intestinalis (species) [taxon 166486], Bacteroides ovatus (species) [taxon 28116], [Clostridium] leptum (species) [taxon 1535], Nakaseomyces glabratus (species) [taxon 5478], Veillonella parvula (species) [taxon 29466], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Enterocloster asparagiformis (species) [taxon 333367], Enterobacteriaceae (enterobacteria, family) [taxon 543], Eggerthella lenta (species) [taxon 84112], Flavonifractor plautii (species) [taxon 292800], Human parvovirus B19 (no rank) [taxon 10798], Ruminococcus bicirculans (ex Wegman et al. 2014) (species) [taxon 1160721], Bifidobacterium adolescentis (species) [taxon 1680], Roseburia hominis (species) [taxon 301301], Candida [taxon 1535326], Oscillibacter sp. (species) [taxon 1945593], Prevotella histicola (species) [taxon 470565], Streptococcus vestibularis (species) [taxon 1343], Blautia (genus) [taxon 572511], Lodderomyces parapsilosis (species) [taxon 5480], Limosilactobacillus reuteri (species) [taxon 1598], Anaerostipes (genus) [taxon 207244], Alistipes (genus) [taxon 239759], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376]
- **Cell lines:** SM13 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_7004), MOG35-55 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_DG55)

## Full text

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## References

104 references — full list in the complete paper: https://tomesphere.com/paper/PMC12865152/full.md

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Source: https://tomesphere.com/paper/PMC12865152