# African swine fever outbreaks in German pig holdings – experiences, epidemiological considerations and genome sequences

**Authors:** Katja Schulz, Sten Calvelage, Lisa Rogoll, Franz J. Conraths, Christoph Staubach, Kerstin Albrecht, Ronny Marquart, Jennifer Kühn, Annett Rudovsky, Dieter Brunklaus, Gerald Stumpf, Jeannine Gruse, Jörn Gethmann, Sandra Blome, Carola Sauter-Louis

PMC · DOI: 10.1038/s41598-026-36441-1 · Scientific Reports · 2026-01-29

## TL;DR

This study examines nine African swine fever outbreaks in Germany, analyzing their epidemiology and genome sequences to understand transmission patterns.

## Contribution

The study is the first to provide detailed epidemiological and genomic data on these outbreaks in Germany.

## Key findings

- Genome sequencing supported the link between outbreaks and infected wild boar populations.
- Outbreaks occurred in farms with both low and high biosecurity, making pattern identification difficult.
- Strict biosecurity remains the most critical measure to prevent virus introduction.

## Abstract

Until December 2025, 18 African swine fever outbreaks have occurred in domestic pig holdings in Germany. However, nine of them emerged in western Germany in 2024, representing a separate spatial and temporal cluster. Thus, the current study is limited to the remaining nine outbreaks. We aimed to illustrate the epidemiological background of each of the nine outbreaks. The assessments included the results of the outbreak investigations and of the genome sequencing. This is the first study to provide a detailed overview of these outbreaks and, in particular, to publish the genome sequences involved. In several outbreaks, a connection to the neighboring affected wild boar population was considered likely. The hypotheses were supported by genome sequencing; thus, the study has underscored the benefit of including results of genome sequencing in the evaluation of disease epidemiology. However, outbreaks also occurred on farms without reported cases in wild boar in the vicinity. Similarly, outbreaks were observed in farms with low biosecurity standards but also in farms with very high biosecurity, emphasizing the difficulty to identify a pattern in the outbreaks. Still, it has to be acknowledged that a consistent and sustained compliance with biosecurity measures represents the most important factor in preventing virus introduction.

The online version contains supplementary material available at 10.1038/s41598-026-36441-1.

## Linked entities

- **Diseases:** African swine fever (MONDO:0025377)

## Full-text entities

- **Genes:** EP424R (pEP424R) [NCBI Gene 22220437], D339L (pD339L) [NCBI Gene 22220334], STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, ARSF (arylsulfatase F) [NCBI Gene 416] {aka ASF}, EP402R (CD2 homolog) [NCBI Gene 22220440], KITLG (KIT ligand) [NCBI Gene 397509] {aka KITL}, K196R (thymidine kinase) [NCBI Gene 22220432]
- **Diseases:** infected (MESH:D007239), skin alterations (MESH:D012868), bacterial disease (MESH:D001424), ASF-infected (MESH:D000357), fever (MESH:D005334), swine fever (MESH:D006691)
- **Chemicals:** OX376250 (-), EDTA (MESH:D004492)
- **Species:** Canis lupus familiaris (dog, subspecies) [taxon 9615], Ovis aries (domestic sheep, species) [taxon 9940], Sus scrofa (pig, species) [taxon 9823], African swine fever virus (no rank) [taxon 10497], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** C315R, p.Cys465Tyr, g.173.628T > A, g.72.358G > T, g.50.922 C > T, g.41.409G > A, g.171.436 C > T, His293Leu, g.187.978_187.979insA, g.32.788_32.810del, g.140.696G > A, g.187.977_187.978del, g.17.599T > A, g.34.454del, g.71.983 A > G, g.139.822insA, I267L, g.65.259 C > T, g.24.994_24.995insA, g.124.296T > A, I329L, c.181.407del, p.Gly255Cys, g.88.242 A > G, c.37.027del, M448R, c.27.197G > A, g.80.770G > A, g.93.333 C > A

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12864975/full.md

## References

9 references — full list in the complete paper: https://tomesphere.com/paper/PMC12864975/full.md

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Source: https://tomesphere.com/paper/PMC12864975