# Nucleolar protein 6 as a potential oncogenic factor in colorectal cancer

**Authors:** Shunxin Song, Yixin Zhang, Lingxi Li, Kaikai Zhou, Yuguo Zhao, Zhao Yang, Shuohao Guo, Rongzhang He, Jianwen Zhang

PMC · DOI: 10.1371/journal.pone.0340047 · PLOS One · 2026-02-02

## TL;DR

This study explores NOL6 as a potential driver of colorectal cancer, showing that reducing NOL6 slows cancer growth and could lead to new treatments.

## Contribution

The study identifies NOL6 as a novel oncogenic factor in CRC and validates its role in tumor progression through multiple experimental models.

## Key findings

- NOL6 is significantly upregulated in CRC cells compared to normal cells.
- Downregulating NOL6 reduces CRC cell proliferation, colony formation, and tumor growth in mice.
- NOL6 knockdown suppresses MCM3 and MCM7 expression, suggesting a role in cell cycle regulation.

## Abstract

Colorectal cancer (CRC) is a common malignancy of the digestive tract associated with high mortality rates and significant invasive properties. Despite advancements in research, a comprehensive understanding of the regulatory mechanisms underlying CRC remains elusive.

This study aimed to investigate the potential role of nucleolar protein 6 (NOL6) and its related genes as novel biomarkers for cell proliferation in CRC. The findings of this study could significantly contribute to early diagnosis and more effective therapeutic strategies for CRC.

Human CRC cell line HCT116 was cultured under standard conditions. Quantitative real-time polymerase chain reaction and immunohistochemistry analysis were used to measure NOL6 expression levels in CRC tissues. Cell proliferation was assessed using the MTT assay, Celigo cell count assay, and colony formation assays, while flow cytometry was employed to evaluate cell apoptosis. Additionally, a transwell migration assay was performed to evaluate CRC cell migration and invasion. Comprehensive proteomic and transcriptomic analyses were performed to identify the downstream genes and pathways affected by NOL6 knockdown. The expression of these genes was further validated by Western blotting. Xenograft mouse models were used to determine the effects of NOL6 on CRC in vivo. Tandem mass tags (TMT)-labeled quantitative proteomic technology and bioinformatic analysis were employed to identify the functional pathway and proteins regulated by NOL6.

The Cancer Genome Atlas data analysis revealed a significant upregulation of NOL6 in CRC cells compared with adjacent normal cells. In HCT116 cells, downregulation of NOL6 was associated with decreased proliferation and colony formation, as well as increased apoptosis. Additionally, NOL6 knockdown resulted in a decrease in the weight and volume of tumors in nude mice, suggesting its role in tumorigenesis. TMT and Western blot analyses revealed that NOL6 knockdown suppressed MCM3 and MCM7 expression.

This study demonstrated that NOL6 functions as an oncogene that facilitates CRC progression, suggesting its potential role as a therapeutic target for CRC management.

## Linked entities

- **Genes:** NOL6 (nucleolar protein 6) [NCBI Gene 65083], MCM3 (minichromosome maintenance complex component 3) [NCBI Gene 4172], MCM7 (minichromosome maintenance complex component 7) [NCBI Gene 4176]
- **Proteins:** NOL6 (nucleolar protein 6), MCM3 (minichromosome maintenance complex component 3), MCM7 (minichromosome maintenance complex component 7)
- **Diseases:** colorectal cancer (MONDO:0005575), CRC (MONDO:0005575)
- **Species:** Homo sapiens (taxon 9606), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Mcm2 (minichromosome maintenance complex component 2) [NCBI Gene 17216] {aka BM28, CDCL1, Mcmd2, mKIAA0030}, Mcm3 (minichromosome maintenance complex component 3) [NCBI Gene 17215] {aka Mcmd, P1, P1-MCM3, p1.m}, RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, SNHG1 (small nucleolar RNA host gene 1) [NCBI Gene 23642] {aka LINC00057, NCRNA00057, U22HG, UHG, lncRNA16}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, NOL6 (nucleolar protein 6) [NCBI Gene 65083] {aka NRAP, UTP22, bA311H10.1}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, Mcm7 (minichromosome maintenance complex component 7) [NCBI Gene 17220] {aka Mcmd7, mCDC47}, MCM3 (minichromosome maintenance complex component 3) [NCBI Gene 4172] {aka HCC5, P1-MCM3, P1.h, RLFB}, SNHG8 (small nucleolar RNA host gene 8) [NCBI Gene 100093630] {aka LINC00060, NCRNA00060}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, NIFK (nucleolar protein interacting with the FHA domain of MKI67) [NCBI Gene 84365] {aka MKI67IP, Nop15, Nopp34}, Nol6 (nucleolar protein family 6 (RNA-associated)) [NCBI Gene 230082] {aka Nrap}, BLNK (B cell linker) [NCBI Gene 29760] {aka AGM4, BASH, BLNK-S, LY57, SLP-65, SLP65}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, MCM7 (minichromosome maintenance complex component 7) [NCBI Gene 4176] {aka CDC47, MCM2, P1.1-MCM3, P1CDC47, P85MCM, PNAS146}, Pcna (proliferating cell nuclear antigen) [NCBI Gene 18538], NRAP (nebulin related anchoring protein) [NCBI Gene 4892] {aka CMD2N, N-RAP}
- **Diseases:** rectal cancer (MESH:D012004), deaths (MESH:D003643), prostate, gastric, and hepatocellular carcinomas (MESH:D011472), CRC (MESH:D015179), mycoplasma (MESH:D009175), tumorigenesis (MESH:D063646), para- (MESH:D002277), COAD (MESH:D003110), cancer (MESH:D009369), READ (MESH:D000230)
- **Chemicals:** paraformaldehyde (MESH:C003043), penicillin (MESH:D010406), ethanol (MESH:D000431), propidium iodide (MESH:D011419), streptomycin (MESH:D013307), GIEMSA (MESH:D001399), DMSO (MESH:D004121), decitabine (MESH:D000077209), PVDF (MESH:C024865), CO2 (MESH:D002245), MTT (MESH:C070243), hematoxylin (MESH:D006416), pentobarbital (MESH:D010424), crystal violet (MESH:D005840), alcohol (MESH:D000438), water (MESH:D014867), TRIzol (MESH:C411644), nitrogen (MESH:D009584), SDS (MESH:D012967), PI (MESH:D010716), Celigo (-), xylene (MESH:D014992), puromycin (MESH:D011691), Peroxide (MESH:D010545)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12863548/full.md

## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12863548/full.md

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Source: https://tomesphere.com/paper/PMC12863548