# Interspecies rice versus Arabidopsis thaliana protein–protein interactome profiling by touch‐down overlapping PCR coupled with HiFi long‐read sequencing

**Authors:** Jie Huang, Yu Cheng, Jing Ruan, Xixi Liu, Dandan Xia, Yiting Chen, Delong Fan, Jiezheng Ying, Yifeng Wang, Xiaohong Tong, Zhiyong Li, Dawei Xue, Jianwei Zhang, Jian Zhang, Yuxuan Hou

PMC · DOI: 10.1111/jipb.70107 · Journal of Integrative Plant Biology · 2025-12-04

## TL;DR

This paper introduces a new high-throughput method to identify protein interactions between rice and Arabidopsis plants.

## Contribution

A novel method combining touch-down overlapping PCR and HiFi sequencing is developed for interspecies protein interaction profiling.

## Key findings

- The method identified 7,726 high-confidence protein interactions between rice and Arabidopsis.
- The approach integrates a library-vs-library yeast two-hybrid strategy with optimized PCR and sequencing.
- The method is effective for large-scale profiling of interspecies protein interactions.

## Abstract

Touch‐down overlapping PCR coupled with HiFi long‐read sequencing, a high‐throughput method for large‐scale profiling of protein‐protein interactions based on stitch‐PCR identified 7,726 high‐confidence interactions between rice and Arabidopsis proteins by integrating a library‐vs‐library yeast two‐hybrid strategy with optimized PCR and long‐read sequencing.

## Linked entities

- **Species:** Arabidopsis thaliana (taxon 3702)

## Full-text entities

- **Species:** Oryza sativa (Asian cultivated rice, species) [taxon 4530], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12863018/full.md

## References

10 references — full list in the complete paper: https://tomesphere.com/paper/PMC12863018/full.md

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Source: https://tomesphere.com/paper/PMC12863018