# Alterations in Gut Microbiota and Metabolic Profiles in Relapsed or Refractory Lymphoma

**Authors:** Yu‐Ying Guo, Kang‐Jing Xue, Liao Wang, Gang‐Gang Wang, Ting‐Ting Zhang, Shu‐Ling Hou

PMC · DOI: 10.1002/mbo3.70225 · MicrobiologyOpen · 2026-02-02

## TL;DR

This study explores how gut bacteria and metabolic changes differ in patients with relapsed or refractory lymphoma compared to those with newly diagnosed lymphoma, suggesting potential new treatment strategies.

## Contribution

The study identifies specific gut microbiota and metabolic alterations in relapsed/refractory lymphoma patients, proposing gut microbiota modulation as a novel therapeutic approach.

## Key findings

- Patients with relapsed/refractory lymphoma showed increased Actinobacteriota and Alphaproteobacteria, and decreased Faecalibacterium and Clostridium.
- Seven metabolites were significantly upregulated in relapsed/refractory lymphoma, including 3-amino-4-methylpentanoic acid and pantothenic acid.
- Altered gut microbiota and metabolic profiles suggest a role in lymphoma pathophysiology and potential for fecal microbiota transplantation as therapy.

## Abstract

To identify potential therapeutic strategies for relapsed or refractory lymphoma (R/RL) by examining differences in gut microbiota composition and metabolic profiles between patients with R/RL and those with primary, treatment‐naïve lymphoma (PL), using fecal microbiota analysis and metabolomics. A total of 21 patients with lymphoma were enrolled at the Department of Lymphoma and Oncology, Shanxi Bethune Hospital, between November 2023 and December 2024. The cohort included 14 patients with R/RL and 7 with PL, who served as the control group. Pretreatment fecal samples and clinical data were collected from all participants. Gut microbiota profiling was conducted using 16S rDNA sequencing, including alpha diversity, beta diversity, species composition, and differential abundance. Untargeted metabolomics was employed to identify and analyze differentially expressed metabolites between the groups. Patients with R/RL exhibited increased relative abundances of Actinobacteriota and Alphaproteobacteria and decreased levels of Erysipelotrichales, Morganellaceae, Faecalibacterium, Clostridium, Klebsiella, and Ruminococcus. Seven metabolites were significantly upregulated in the R/RL group (p < 0.05): 3‐amino‐4‐methylpentanoic acid (p = 0.028), 2‐hydroxybutyric acid (p = 0.020), UDP‐N‐acetylglucosamine (UDP‐N‐AG) (p = 0.011), pantothenic acid (p = 0.037), isoleucine (p = 0.028), glycine (p = 0.044), and alanine (p = 0.025). Literature review and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated enhanced central carbon metabolism and amino acid metabolism in cancer. Alterations in gut microbiota and metabolic activity may contribute to the pathophysiology of R/RL. Therapeutic modulation of the gut microbiota, including the use of fecal microbiota transplantation, may improve the intestinal immune microenvironment in this patient population. The present work is hypothesis‐generating and requires large‐scale validation.

Metabolomic volcano‐heatmap reveals seven upregulated metabolites in relapsed/refractory lymphoma, underscoring gut metabolic reprogramming as a potential therapeutic target.

## Linked entities

- **Chemicals:** 3-amino-4-methylpentanoic acid (PubChem CID 193411), 2-hydroxybutyric acid (PubChem CID 11266), UDP-N-acetylglucosamine (PubChem CID 445675), pantothenic acid (PubChem CID 988), isoleucine (PubChem CID 791), glycine (PubChem CID 750), alanine (PubChem CID 239)
- **Diseases:** lymphoma (MONDO:0003659)

## Full-text entities

- **Genes:** BTK (Bruton tyrosine kinase) [NCBI Gene 695] {aka AGMX1, AT, ATK, BPK, IGHD3, IMD1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, NFATC1 (nuclear factor of activated T cells 1) [NCBI Gene 4772] {aka NF-ATC, NF-ATc1.2, NFAT2, NFATc}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, SLC5A8 (solute carrier family 5 member 8) [NCBI Gene 160728] {aka AIT, SMCT, SMCT1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, CCS (copper chaperone for superoxide dismutase) [NCBI Gene 9973], OGT (O-linked N-acetylglucosamine (GlcNAc) transferase) [NCBI Gene 8473] {aka HINCUT-1, HRNT1, MRX106, O-GLCNAC, OGT1, XLID106}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, NCOR2 (nuclear receptor corepressor 2) [NCBI Gene 9612] {aka CTG26, N-CoR2, SMAP270, SMRT, SMRTE, SMRTE-tau}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, SOCS1 (suppressor of cytokine signaling 1) [NCBI Gene 8651] {aka AISIMD, CIS1, CISH1, JAB, SOCS-1, SSI-1}, TLR5 (toll like receptor 5) [NCBI Gene 7100] {aka MELIOS, SLE1, SLEB1, TIL3}, ABCB6 (ATP binding cassette subfamily B member 6 (LAN blood group)) [NCBI Gene 10058] {aka ABC, LAN, MTABC3, PRP, umat}, KRT20 (keratin 20) [NCBI Gene 54474] {aka CD20, CK-20, CK20, K20, KRT21}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, SLC16A1 (solute carrier family 16 member 1) [NCBI Gene 6566] {aka HHF7, MCT, MCT1, MCT1D}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}
- **Diseases:** CR (MESH:D012075), vascular diseases (MESH:D014652), abnormal lipid metabolism (MESH:D052439), FL (MESH:D008224), colon cancer (MESH:D015179), inflammation (MESH:D007249), gastrointestinal cancer (MESH:D005770), tumorigenesis (MESH:D063646), peripheral vascular diseases (MESH:D016491), breast cancer (MESH:D001943), pulmonary hypertension (MESH:D006976), metastasis (MESH:D009362), NHL (MESH:D008228), metabolic syndrome (MESH:D024821), extranodal B-cell tumor (MESH:D015448), diabetes (MESH:D003920), diseases (MESH:D004194), coronary heart disease (MESH:D003327), PR (MESH:D004828), III (MESH:C537189), H. pylori infection (MESH:D016481), Haematolymphoid Tumors (MESH:D009369), HCC (MESH:D006528), Mucosa-associated lymphoid tissue (MALT) lymphoma (MESH:D018442), glycine uptake (MESH:C536778), melanoma (MESH:D008545), AITL (MESH:D016399), intestinal lymphoma (MESH:D008223), gastric cancer (MESH:D013274), inflammatory bacteria (MESH:C000719206), tricarboxylic acid cycle disorder (MESH:C564762), cytotoxic (MESH:D064420), obesity (MESH:D009765), DLBCL (MESH:D016403), cerebrovascular diseases (MESH:D002561), multiple myeloma (MESH:D009101), mucosal injury (MESH:D052016)
- **Chemicals:** UDP-N-AG (MESH:D014537), bile acid (MESH:D001647), alkaloids (MESH:D000470), triglyceride (MESH:D014280), alanine (MESH:D000409), pantothenic acid (MESH:D010205), water (MESH:D014867), ammonium acetate (MESH:C018824), GemOx (MESH:C508870), nucleotide (MESH:D009711), 3-amino-4-methylpentanoic acid (MESH:C027611), Isoleucine (MESH:D007532), Carbon (MESH:D002244), GDP (MESH:D006153), cystathionine (MESH:D003540), pentose phosphate (MESH:D010428), acids (MESH:D000143), threonine (MESH:D013912), carbohydrate (MESH:D002241), lysine (MESH:D008239), Aminoacyl-tRNA (MESH:D012346), CoA (MESH:D003065), serine (MESH:D012694), acetic acid (MESH:D019342), ICE (MESH:D007053), CHOEP (-), 2-Oxobutyric acid (MESH:C005087), isopropanol (MESH:D019840), glutamine (MESH:D005973), acetonitrile (MESH:C032159), lenalidomide (MESH:D000077269), hexosamine (MESH:D006595), Glycine (MESH:D005998), BCAAs (MESH:D000597), 2-hydroxybutyric acid (MESH:C031570), lipid (MESH:D008055), Butyrate (MESH:D002087), Valine (MESH:D014633), ammonium hydroxide (MESH:D064753), methanol (MESH:D000432), glucose (MESH:D005947), Leucine (MESH:D007930), sugar (MESH:D000073893), chidamide (MESH:C547816), nicotinamide (MESH:D009536), deoxycholic acid (MESH:D003840), amino acid (MESH:D000596), agarose (MESH:D012685)
- **Species:** Homo sapiens (human, species) [taxon 9606], Ruminococcus (genus) [taxon 1263], Lactobacillus (genus) [taxon 1578], Clostridia (class) [taxon 186801], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Bacilli (class) [taxon 91061], Bacteroidia (class) [taxon 200643], Escherichia coli (E. coli, species) [taxon 562], Enterococcus (genus) [taxon 1350], Rickettsia (genus) [taxon 780], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Mus musculus (house mouse, species) [taxon 10090], Bacteroides fragilis (species) [taxon 817], Clostridium (genus) [taxon 1485], Streptococcus (genus) [taxon 1301], Erysipelotrichales (order) [taxon 526525], Actinomycetota (actinobacteria, phylum) [taxon 201174], Klebsiella (genus) [taxon 570], Faecalibacterium (genus) [taxon 216851], Bacteroidota (Bacteroides-Cytophaga-Flexibacter group, phylum) [taxon 976], Bifidobacterium (genus) [taxon 1678], Enterobacteriaceae (enterobacteria, family) [taxon 543], Shigella (genus) [taxon 620], Bifidobacteriales (order) [taxon 85004], Helicobacter pylori (species) [taxon 210], Chlamydia (genus) [taxon 810], Agathobacter rectalis (species) [taxon 39491], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]
- **Mutations:** serine-glycine, isoleucine in R

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12862655/full.md

## References

26 references — full list in the complete paper: https://tomesphere.com/paper/PMC12862655/full.md

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Source: https://tomesphere.com/paper/PMC12862655