# DNMT gene expression in peripheral leukocytes in schizophrenia and correlations with one-carbon metabolites: folate, total homocysteine, and vitamin B6

**Authors:** Yukiko Tomioka, Masahito Nakataki, Hidehiro Umehara, Tomohiro Yoshida, Hiroya Matsuda, Yui Matsumoto, Mariko Aoki, Yuri Yoshida, Yuichiro Kamiyama, Tomohiko Nakayama, Naoki Yamada, Shusuke Numata

PMC · DOI: 10.3389/fpsyt.2025.1715372 · Frontiers in Psychiatry · 2026-01-19

## TL;DR

This study found higher DNA methylation gene expression in schizophrenia patients and linked it to lower levels of certain nutrients like folate and vitamin B6.

## Contribution

The study identifies elevated DNMT1 and DNMT3a expression in schizophrenia and links it to one-carbon metabolites for the first time in peripheral leukocytes.

## Key findings

- DNMT1 and DNMT3a expression was significantly higher in schizophrenia patients compared to controls.
- DNMT1 expression correlated with lower folate levels, and DNMT3a with lower vitamin B6 levels in combined groups.

## Abstract

Previous studies have identified alterations in one-carbon metabolism (OCM), including DNA methylation abnormalities, in individuals with schizophrenia. However, the precise etiology of this disorder remains unclear. In the present study, we examined variations in the expression of DNMT1 and DNMT3a—genes implicated in DNA methylation—using peripheral blood leukocytes from Japanese patients with chronic schizophrenia and healthy controls. Additionally, using our previously acquired data, we explored the association between OCM-related factors and DNMT expression levels.

Expression levels of DNMT1 and DNMT3a in 215 patients with chronic schizophrenia and 210 healthy controls were quantified using real-time PCR. The Mann-Whitney U test was used to compare the differences between two independent groups. Furthermore, Spearman’s correlation analysis was conducted to investigate the relationships between DNMT genes` expression levels and OCM-related metabolites (blood folate, vitamin B6, and total homocysteine).

The expression levels of DNMT1 and DNMT3a in peripheral leukocytes were significantly elevated in patients with chronic schizophrenia compared with controls (p = 1.4 × 10–6 and 2.9 × 10-3, respectively). DNMT1 mRNA expression levels exhibited a weak negative correlation with folate exclusively in the aggregated cohort (N = 425) (ρ = −0.16, adjusted q = 5.0 × 10-3), and DNMT3a mRNA expression levels showed a weak negative correlation with vitamin B6 alone in the combined group (ρ = −0.12, adjusted q = 0.03).

These findings suggest a potential correlation between nutritional status and elevated expression of DNMT1 and DNMT3a in schizophrenia. Our findings contribute to the understanding of the epigenetic mechanisms associated with schizophrenia and highlight the need for further investigation of the relationships among gene expression, nutritional status, and psychiatric manifestations.

## Linked entities

- **Genes:** DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786], DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788]
- **Chemicals:** folate (PubChem CID 135405876), vitamin B6 (PubChem CID 1054)
- **Diseases:** schizophrenia (MONDO:0005090)

## Full-text entities

- **Genes:** DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}
- **Diseases:** psychiatric (MESH:D001523), chronic schizophrenia (MESH:D012559)
- **Chemicals:** homocysteine (MESH:D006710), carbon (MESH:D002244), folate (MESH:D005492), vitamin B6 (MESH:D025101), one (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12862080/full.md

## References

28 references — full list in the complete paper: https://tomesphere.com/paper/PMC12862080/full.md

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Source: https://tomesphere.com/paper/PMC12862080