# IRF7 orchestrates maladaptive smooth muscle cell phenotype switching in atherosclerosis

**Authors:** Rundong Cai, Xin Chen, Hongxia Zhang, Qi Wang, Wanrong Xie, Xinghua Pan, Chun Liang, Haiying Zhu

PMC · DOI: 10.1093/pcmedi/pbaf039 · 2025-12-27

## TL;DR

This study identifies IRF7 as a key driver of harmful smooth muscle cell changes in atherosclerosis, which could lead to new treatments for unstable artery plaques.

## Contribution

The study identifies IRF7 as a master regulator of pathogenic smooth muscle cell transdifferentiation in atherosclerosis.

## Key findings

- IRF7 orchestrates the transition of smooth muscle cells into pro-inflammatory macrophage-like cells in atherosclerotic plaques.
- SMC-specific knockdown of Irf7 reduces plaque progression and stabilizes fibrous caps in mice.
- High IRF7 expression correlates with plaque instability in human atherosclerosis.

## Abstract

Smooth muscle cells (SMCs) exhibit remarkable plasticity, undergoing extensive phenotypic switching to generate a highly heterogeneous population within atherosclerotic plaques. While recent studies have highlighted the contribution of SMC-derived macrophage-like cells to plaque inflammation, the specific molecular drivers governing the transition to these pathogenic states remain poorly understood.

Here, we re-analyzed single-cell RNA sequencing data from lineage-traced mice to dissect SMC heterogeneity during atherogenesis. Trajectory analysis revealed that SMCs transdifferentiate into a distinct pro-inflammatory macrophage-like subpopulation (macrophage 4) via an intermediate “stem–endothelial–monocyte" cell state. Integrated gene regulatory network inference and in silico perturbation modeling identified interferon regulatory factor 7 (IRF7) as a master transcriptional regulator orchestrating this specific pathogenic transition.

Clinically, IRF7 expression was significantly upregulated in unstable and advanced human atherosclerotic plaques, correlating strongly with inflammatory macrophage burden. In vivo, ApoE−/− mice challenged with a high-fat diet exhibited robust upregulation of IRF7 in aortic plaques, which co-localized with macrophage markers. Crucially, SMC-specific knockdown of Irf7 using an AAV-SM22α-shIRF7 vector significantly attenuated atherosclerotic plaque progression, reduced necrotic core formation, and enhanced fibrous cap stability. Mechanistically, Irf7 silencing preserved the contractile SMC phenotype and inhibited the accumulation of pro-inflammatory SMC-derived macrophage-like cells within the lesion.

These findings identify IRF7 as a critical checkpoint in maladaptive SMC phenotype switching. We demonstrate that IRF7 drives the transdifferentiation of SMCs into a pro-inflammatory macrophage-like state, thereby fueling plaque instability. Consequently, therapeutic strategies capable of inhibiting IRF7-mediated SMC plasticity may prove effective in stabilizing vulnerable atherosclerotic plaques.

Graphical AbstractSingle-cell RNA sequencing identifies the trajectory of SMC transdifferentiation into a pro-inflammatory macrophage-like state with IRF7 as the master regulator of this pathogenic transition. In human plaques, high IRF7 expression correlates with plaque instability. In vivo SMC-specific knockdown of Irf7 inhibits the maladaptive phenotypic switching and stabilizes the atherosclerotic plaque.

Single-cell RNA sequencing identifies the trajectory of SMC transdifferentiation into a pro-inflammatory macrophage-like state with IRF7 as the master regulator of this pathogenic transition. In human plaques, high IRF7 expression correlates with plaque instability. In vivo SMC-specific knockdown of Irf7 inhibits the maladaptive phenotypic switching and stabilizes the atherosclerotic plaque.

## Linked entities

- **Genes:** IRF7 (interferon regulatory factor 7) [NCBI Gene 3665], IRF7 (interferon regulatory factor 7) [NCBI Gene 3665]
- **Diseases:** atherosclerosis (MONDO:0005311)

## Full-text entities

- **Genes:** LDLR (low density lipoprotein receptor) [NCBI Gene 3949] {aka LDLCQ2}, Irf7 (interferon regulatory factor 7) [NCBI Gene 54123], Tagln (transgelin) [NCBI Gene 21345] {aka Sm22, Sm22a, Ws310}, IRF8 (interferon regulatory factor 8) [NCBI Gene 3394] {aka H-ICSBP, ICSBP, ICSBP1, IMD32A, IMD32B, IRF-8}, Jun (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 16476] {aka AP-1, Junc, c-jun}, TAGLN (transgelin) [NCBI Gene 6876] {aka SM22, SM22-alpha, SMCC, TAGLN1, TGLN, WS3-10}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, IRF1 (interferon regulatory factor 1) [NCBI Gene 3659] {aka IMD117, IRF-1, MAR}, Cd68 (CD68 antigen) [NCBI Gene 12514] {aka Lamp4, Scard1, gp110}, Birc3 (baculoviral IAP repeat-containing 3) [NCBI Gene 11796] {aka Api1, Api2, C-IAP2, HIAP2, IAP1, IAP2}, IRF5 (interferon regulatory factor 5) [NCBI Gene 3663] {aka SLEB10}, Cd200 (CD200 molecule) [NCBI Gene 17470] {aka Mox2, OX2}, IRF7 (interferon regulatory factor 7) [NCBI Gene 3665] {aka IMD39, IRF-7, IRF-7H, IRF7A, IRF7B, IRF7C}, Atf3 (activating transcription factor 3) [NCBI Gene 11910] {aka LRG-21}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}, MYH11 (myosin heavy chain 11) [NCBI Gene 4629] {aka AAT4, FAA4, SMHC, SMMHC, SMMS-1, VSCM2}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, Myh11 (myosin, heavy polypeptide 11, smooth muscle) [NCBI Gene 17880] {aka SM1, SM2, smMHC}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, PCSK9 (proprotein convertase subtilisin/kexin type 9) [NCBI Gene 255738] {aka FH3, FHCL3, HCHOLA3, LDLCQ1, NARC-1, NARC1}, CD14 (CD14 molecule) [NCBI Gene 929], Ager (advanced glycosylation end product-specific receptor) [NCBI Gene 11596] {aka RAGE}, Pcna (proliferating cell nuclear antigen) [NCBI Gene 18538], Ldlr (low density lipoprotein receptor) [NCBI Gene 16835] {aka Hlb301}, CD200 (CD200 molecule) [NCBI Gene 4345] {aka MOX1, MOX2, MRC, OX-2}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}
- **Diseases:** aortic root lesions (MESH:D000094628), viral infections (MESH:D014777), restenosis (MESH:D023903), atheroma (MESH:D058226), Atherosclerosis (MESH:D050197), pulmonary hypertension (MESH:D006976), hypercholesterolemia (MESH:D006937), atherosclerotic inflammation (MESH:D007249), plaque rupture (MESH:D012421), ischemic heart disease (MESH:D017202), vascular injury (MESH:D057772), necrotic (MESH:D009336), WD (MESH:D020241), carotid atherosclerosis (MESH:D002340), neointimal hyperplasia (MESH:D006965), stroke (MESH:D020521), hyperlipidemia (MESH:D006949), IPH (MESH:D006470), carotid artery injury (MESH:D020212), UMAP (MESH:C567162), cancer (MESH:D009369)
- **Chemicals:** PVDF (MESH:C024865), H&amp;E (MESH:D006371), eosin (MESH:D004801), EDTA (MESH:D004492), ethanol (MESH:D000431), paraformaldehyde (MESH:C003043), hydrogen peroxide (MESH:D006861), triglycerides (MESH:D014280), cholesterol (MESH:D002784), polyacrylamide (MESH:C016679), hematoxylin (MESH:D006416), oil red O (MESH:C011049), paraffin (MESH:D010232), nitrogen (MESH:D009584), SDS (MESH:D012967), lipid (MESH:D008055), citrate (MESH:D019343), fat (MESH:D005223), 3,3'-diaminobenzidine (MESH:D015100), xylene (MESH:D014992), Masson's trichrome (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Adeno-associated virus (species) [taxon 272636]
- **Cell lines:** /6J — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_W797)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12859258/full.md

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Source: https://tomesphere.com/paper/PMC12859258