# Modelling severe COVID-19 in TLR3-mutated hiPSCs-derived lung organoids

**Authors:** Andrea Latini, Paola Spitalieri, Federica Centofanti, Barbara Rizzacasa, Donatella Amatore, Giorgia Grilli, Riccardo De Santis, Lorenzo Vaccaro, Vito Luigi Colona, Giulio Puleri, Anna Maria Nardone, Michela Biancolella, Elena Campione, Loredana Sarmati, Paola Rogliani, Davide Cacchiarelli, Antonio Novelli, Federica Sangiuolo, Florigio Lista, Giuseppe Novelli

PMC · DOI: 10.1038/s41420-025-02936-5 · 2025-12-26

## TL;DR

This study uses patient-derived lung organoids to model severe COVID-19 caused by a TLR3 mutation, showing how genetic factors influence disease severity.

## Contribution

A novel patient-specific lung organoid model is developed to study the impact of TLR3 mutations on SARS-CoV-2 infection and disease severity.

## Key findings

- TLR3-mutated lung organoids showed reduced TLR3 and downstream gene expression.
- Infection increased fibrinogen gene expression, linked to severe COVID-19.
- TLR3 expression was still inducible despite the loss-of-function mutation.

## Abstract

Clinical variability in COVID-19 is partly explained by host genetic factors, including inborn errors of immunity. We investigated a patient with a heterozygous nonsense mutation in the TLR3 gene (p.Trp769*) by generating human-induced pluripotent stem cells (hiPSCs) and differentiating them into lung organoids (hLORGs). TLR3-mutated hLORGs showed reduced basal expression of TLR3 and downstream signaling genes. Following infection with a pseudotyped SARS-CoV-2 virus and live SARS-CoV-2, RNA-Seq and qPCR analyses revealed significant upregulation of fibrinogen genes (FGA, FGG), which are associated with severe COVID-19. Interestingly, TLR3 expression remained inducible upon infection, despite the loss-of-function mutation. Our patient-derived hLORG model recapitulates the pathophysiological features of the patient and provides a platform to investigate host–virus interactions and test targeted therapies for genetically at-risk individuals.

## Linked entities

- **Genes:** TLR3 (toll like receptor 3) [NCBI Gene 7098], FGA (fibrinogen alpha chain) [NCBI Gene 2243], FGG (fibrinogen gamma chain) [NCBI Gene 2266]
- **Diseases:** COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** FGB (fibrinogen beta chain) [NCBI Gene 2244] {aka HEL-S-78p}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, FGG (fibrinogen gamma chain) [NCBI Gene 2266], FGA (fibrinogen alpha chain) [NCBI Gene 2243] {aka AMYLD2, Fib2}
- **Diseases:** inborn errors of immunity (MESH:D007154), infection (MESH:D007239), COVID-19 (MESH:D000086382)
- **Species:** Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.Trp769*

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12858893/full.md

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Source: https://tomesphere.com/paper/PMC12858893