# The role of m6A RNA methyltransferase METTL3 in drug resistance mechanisms in acute myeloid leukemia

**Authors:** Suresh Prajapati, Charmi Jyotishi, Mansi Patel, Reeshu Gupta

PMC · DOI: 10.1007/s44313-026-00123-8 · 2026-01-30

## TL;DR

This paper reviews how METTL3, an RNA methyltransferase, contributes to drug resistance in acute myeloid leukemia and explores new treatment strategies targeting it.

## Contribution

The paper uniquely integrates METTL3's role in m6A modifications with noncoding RNA regulation, autophagy, and niche adaptation in drug resistance.

## Key findings

- METTL3 stabilizes and promotes translation of resistance-associated genes like BCL2, MCL1, and MYC in AML.
- Pharmacological METTL3 inhibition with STM2457 and PROTACs reverses resistance in preclinical models.
- METTL3 influences noncoding RNA, autophagy, and metabolic-epigenetic crosstalk, linking to broader resistance pathways.

## Abstract

This review examines the role of METTL3, a core RNA methyltransferase, in therapeutic resistance in acute myeloid leukemia (AML) and discusses emerging strategies to address this challenge. METTL3 regulates N6-methyladenosine (m6A) modifications on transcripts involved in key cellular processes, including apoptosis (BCL2, MCL1), metabolism (PGC-1α, CSRP1), proliferation (MYC), autophagy (FOXO3), and bone marrow microenvironmental interactions (ITGA4, AKT1). These modifications enhance the stability and translation of resistance-associated genes, supporting leukemic cell survival under treatment pressure. Pharmacological targeting of METTL3 has shown efficacy in preclinical AML models. Inhibitors such as STM2457, METTL3-directed PROTACs, and rational drug combinations with agents including venetoclax, anthracyclines, and ATRA, have reversed resistance phenotypes and impaired leukemic cell fitness. Beyond canonical resistance mechanisms, METTL3 also regulates noncoding RNAs, autophagy, and metabolic–epigenetic crosstalk, including histone lactylation, linking epitranscriptomic regulation to broader resistance pathways. By integrating molecular, cellular, and microenvironmental evidence, this review underscores METTL3 as a central driver of drug resistance and a promising therapeutic target in relapsed or refractory AML. Unlike previous summaries, it highlights the convergence of METTL3-mediated m6A modifications with noncoding RNA regulation, autophagy, and niche adaptation, and critically evaluates emerging therapeutic approaches, including catalytic inhibitors, PROTACs, and natural compounds.

## Linked entities

- **Genes:** METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596], MCL1 (MCL1 apoptosis regulator, BCL2 family member) [NCBI Gene 4170], PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891], CSRP1 (cysteine and glycine rich protein 1) [NCBI Gene 1465], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609], FOXO3 (forkhead box O3) [NCBI Gene 2309], ITGA4 (integrin subunit alpha 4) [NCBI Gene 3676], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207]
- **Diseases:** acute myeloid leukemia (MONDO:0015667)

## Full-text entities

- **Genes:** PRMT5 (protein arginine methyltransferase 5) [NCBI Gene 10419] {aka HRMT1L5, HSL7, IBP72, JBP1, SKB1, SKB1Hs}, METTL16 (methyltransferase 16, RNA N6-adenosine) [NCBI Gene 79066] {aka METT10D}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, UCP2 (uncoupling protein 2) [NCBI Gene 7351] {aka BMIQ4, SLC25A8, UCPH}, ITGA4 (integrin subunit alpha 4) [NCBI Gene 3676] {aka CD49D, IA4}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, CAT (catalase) [NCBI Gene 847], MCL1 (MCL1 apoptosis regulator, BCL2 family member) [NCBI Gene 4170] {aka BCL2L3, EAT, MCL1-ES, MCL1L, MCL1S, Mcl-1}, RNF113A (ring finger protein 113A) [NCBI Gene 7737] {aka Cwc24, RNF113, TTD5, ZNF183}, MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602] {aka Cmyb, c-myb, c-myb_CDS, efg}, MAPK14 (mitogen-activated protein kinase 14) [NCBI Gene 1432] {aka CSBP, CSBP1, CSBP2, CSPB1, EXIP, Mxi2}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MIR20A (microRNA 20a) [NCBI Gene 406982] {aka C13orf25, MIR20, MIRH1, MIRHG1, MIRN20, MIRN20A}, ATG16L1 (autophagy related 16 like 1) [NCBI Gene 55054] {aka APG16L, ATG16A, ATG16L, IBD10, WDR30}, ABCB1 (ATP binding cassette subfamily B member 1) [NCBI Gene 5243] {aka ABC20, CD243, CLCS, ENPAT, GP170, MDR1}, EIF3I (eukaryotic translation initiation factor 3 subunit I) [NCBI Gene 8668] {aka EIF3S2, PRO2242, TRIP-1, TRIP1, eIF3-beta, eIF3-p36}, EIF4E (eukaryotic translation initiation factor 4E) [NCBI Gene 1977] {aka AUTS19, CBP, EIF4E1, EIF4EL1, EIF4F, eIF-4E}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, CBLL1 (Cbl proto-oncogene like 1) [NCBI Gene 79872] {aka HAKAI, RNF188}, ZNF2 (zinc finger protein 2) [NCBI Gene 7549] {aka A1-5, ZNF661, Zfp661}, YTHDF1 (YTH N6-methyladenosine RNA binding protein F1) [NCBI Gene 54915] {aka C20orf21, DF1}, NCBP1 (nuclear cap binding protein subunit 1) [NCBI Gene 4686] {aka CBP80, NCBP, Sto1}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, YTHDF2 (YTH N6-methyladenosine RNA binding protein F2) [NCBI Gene 51441] {aka CAHL, DF2, HGRG8, NY-REN-2}, CSRP1 (cysteine and glycine rich protein 1) [NCBI Gene 1465] {aka CRP, CRP1, CSRP, CYRP, D1S181E, HEL-141}, TAFAZZIN (tafazzin, phospholipid-lysophospholipid transacylase) [NCBI Gene 6901] {aka BTHS, CMD3A, EFE, EFE2, G4.5, LVNCX}, TRAF3IP2-AS1 (TRAF3IP2 antisense RNA 1) [NCBI Gene 643749] {aka BetaFAAR, C6UAS, C6orf3, NCRNA00248, TRAF3IP2-AS2}, GSTK1 (glutathione S-transferase kappa 1) [NCBI Gene 373156] {aka GST, GST 13-13, GST13, GST13-13, GSTK1-1, hGSTK1}, MT1E (metallothionein 1E) [NCBI Gene 4493] {aka MT-1E, MT-IE, MT1, MTD}, HDAC3 (histone deacetylase 3) [NCBI Gene 8841] {aka HD3, KDAC3, RPD3, RPD3-2}, FOXO3 (forkhead box O3) [NCBI Gene 2309] {aka AF6q21, FKHRL1, FKHRL1P2, FOXO2, FOXO3A}, TOP2A (DNA topoisomerase II alpha) [NCBI Gene 7153] {aka TOP2, TOP2alpha, TOPIIA, TP2A}, VHL (von Hippel-Lindau tumor suppressor) [NCBI Gene 7428] {aka HRCA1, RCA1, VHL1, pVHL}, HDAC1 (histone deacetylase 1) [NCBI Gene 3065] {aka GON-10, HD1, KDAC1, RPD3, RPD3L1}, EIF3A (eukaryotic translation initiation factor 3 subunit A) [NCBI Gene 8661] {aka EIF3, EIF3S10, P167, TIF32, eIF3-p170, eIF3-theta}, METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit) [NCBI Gene 57721] {aka hMETTL14}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}, YY1 (YY1 transcription factor) [NCBI Gene 7528] {aka DELTA, GADEVS, INO80S, NF-E1, UCRBP, YIN-YANG-1}, WT1 (WT1 transcription factor) [NCBI Gene 7490] {aka AWT1, GUD, NPHS4, WAGR, WIT-2, WT-1}, PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891] {aka LEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A}, MIR499A (microRNA 499a) [NCBI Gene 574501] {aka MIR499, MIRN499, hsa-mir-499a, mir-499a}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, GPX1 (glutathione peroxidase 1) [NCBI Gene 2876] {aka GPXD, GSHPX1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, ZC3H13 (zinc finger CCCH-type containing 13) [NCBI Gene 23091] {aka KIAA0853, Xio}, CSF3 (colony stimulating factor 3) [NCBI Gene 1440] {aka C17orf33, CSF3OS, GCSF}, PSMA3-AS1 (PSMA3 antisense RNA 1) [NCBI Gene 379025], FBXW7 (F-box and WD repeat domain containing 7) [NCBI Gene 55294] {aka AGO, CDC4, DEDHIL, FBW6, FBW7, FBX30}, MIR34A (microRNA 34a) [NCBI Gene 407040] {aka MIRN34A, miRNA34A, mir-34, mir-34a}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068] {aka ALKBH9, BMIQ14, GDFD, IFEX9}, WTAP (WT1 associated protein) [NCBI Gene 9589] {aka Mum2}, RBM15 (RNA binding motif protein 15) [NCBI Gene 64783] {aka OTT, OTT1}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, VIRMA (vir like m6A methyltransferase associated) [NCBI Gene 25962] {aka KIAA1429, MSTP054, fSAP121}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725] {aka AP-1, AP1, c-Jun, cJUN, p39}
- **Diseases:** APL (MESH:D015473), inflammatory (MESH:D007249), AML (MESH:D015470), hematological malignancy (MESH:D019337), myeloid leukemia (MESH:D007951), cytotoxic (MESH:D064420), Leukemia (MESH:D007938), cancer (MESH:D009369), chromosomal abnormalities (MESH:D002869), anemia (MESH:D000740), hematologic (MESH:D006402), non-small cell lung cancer (MESH:D002289)
- **Chemicals:** Eltrombopag (MESH:C520809), ATRA (MESH:D014212), adenine (MESH:D000225), piperidine (MESH:C032727), IDA (MESH:D015255), flavonoid (MESH:D005419), 5-Aza-Dc (MESH:D000077209), N-methyladenosine (MESH:C010223), GRh2 (MESH:C055305), Isoliquiritigenin (MESH:C040920), anthracycline (MESH:D018943), Adriamycin (MESH:D004317), lactate (MESH:D019344), indole (MESH:C030374), daunorubicin (MESH:D003630), Venetoclax (MESH:C579720), fludarabine (MESH:C024352), EP652 (-), S-adenosylhomocysteine (MESH:D012435), Baf.A1 (MESH:C040929), nicotinamide (MESH:D009536), Chidamide (MESH:C547816), piperazine (MESH:D000077489), EPZ015666 (MESH:C000599896), adenosine (MESH:D000241), triazole (MESH:D014230), azacitidine (MESH:D001374), S-adenosylmethionine (MESH:D012436), Ara-C (MESH:D003561)
- **Species:** Homo sapiens (human, species) [taxon 9606], Glycyrrhiza uralensis (Chinese licorice, species) [taxon 74613]
- **Mutations:** E532A, E532, N539, N539A, D377
- **Cell lines:** MOLM-13 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_2119), Kasumi-1 — Homo sapiens (Human), Childhood acute myeloid leukemia with maturation, Cancer cell line (CVCL_0589), MV4-11 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0064), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), K562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004), STC-15 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_3171), NOMO-1 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_1609), NB4 — Homo sapiens (Human), Acute promyelocytic leukemia with PML-RARA, Cancer cell line (CVCL_0005)

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12858683/full.md

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Source: https://tomesphere.com/paper/PMC12858683