# Functional characterisation of Target of Rapamycin (TOR) signalling in Physcomitrella

**Authors:** Elie Saliba, Sebastian N. W. Hoernstein, Nico van Gessel, Alexander Sentimenti, Karoline M. V. Höß, Juliana Parsons, Eva L. Decker, Pitter F. Huesgen, Henrik Toft Simonsen, Ralf Reski

PMC · DOI: 10.1007/s00299-026-03722-y · 2026-01-30

## TL;DR

This study explores how TOR signaling affects growth and development in the moss Physcomitrella, revealing its role in chloroplast function, protein synthesis, and cell cycle.

## Contribution

The study functionally characterizes TOR signaling in the non-vascular plant Physcomitrella, identifying key components and effects of TOR inhibition.

## Key findings

- TOR inhibition in Physcomitrella delays cell-cycle progression and development.
- Rapamycin and AZD8055 induce chlorosis and inhibit photosynthesis in Physcomitrella.
- PpLST8 can substitute its yeast homolog to support cell growth.

## Abstract

The evolutionary conserved TOR kinase positively controls growth and development of the moss Physcomitrella, development and function of its chloroplasts, its protein synthesis, and cell-cycle progression.

Target of Rapamycin (TOR) is a conserved protein kinase and an important signalling hub in eukaryotes. The moss Physcomitrella (Physcomitrium patens) is a model organism for plant physiology, development, and evolution. However, little is known about TOR signalling in non-vascular plants, including Physcomitrella. Here, we report the effects of inhibiting TOR signalling in Physcomitrella. We identified and characterised Physcomitrella 12-kDa FK506-binding protein (FKBP12), which binds TOR in the presence of rapamycin. Whereas the growth of wild-type protonema is unaffected by rapamycin, overexpressing endogenous FKBP12 rendered the plant susceptible to the inhibitor in a dose-dependent manner. Likewise, protonema growth was inhibited when the TOR-specific inhibitor AZD8055 was present in the culture. We show that rapamycin and AZD8055 have pleiotropic effects, as they delay cell-cycle progression and development, induce chlorosis, inhibit photosynthesis, and alter total protein content. Additionally, we identified and characterised PpTOR, PpLST8, and PpRAPTOR, key components of TOR complex 1 (TORC1), whereas RICTOR and mSIN1 of TORC2 are not encoded by the P. patens genome. We found that PpLST8 substitutes its homolog in yeast to allow cell growth. Physcomitrella mutants were generated with a conditional downregulation of PpTOR, PpLST8, and PpRAPTOR, respectively. They were impaired in growth. Finally, we show TOR-dependent phosphorylation of a well-known TOR phospho-target, the ribosomal protein RPS6, via LC–MS/MS. Collectively, our results show that Physcomitrella growth and development is positively controlled by a conserved TOR kinase. We suggest to further dissect TOR signalling in Physcomitrella in order to elucidate signalling integration via TORC1 in plants.

The online version contains supplementary material available at 10.1007/s00299-026-03722-y.

## Linked entities

- **Genes:** RPS6 (ribosomal protein S6) [NCBI Gene 6194]
- **Proteins:** RORC (RAR related orphan receptor C), FKBP1A (FKBP prolyl isomerase 1A), MLST8 (MTOR associated protein MLST8), raptor (raptor), RICTOR (RPTOR independent companion of MTOR complex 2), RPS6 (ribosomal protein S6)
- **Chemicals:** rapamycin (PubChem CID 5284616), AZD8055 (PubChem CID 25262965)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** S6K2 (serine/threonine protein kinase 2) [NCBI Gene 820019] {aka ARABIDOPSIS THALIANA PROTEIN KINASE 2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ATPK19, ATPK2, ATS6K2, Arabidopsis thaliana protein kinase 19}, RAPTOR1 (Regulatory-associated protein of TOR 1) [NCBI Gene 820032] {aka ATRAPTOR1B, RAPTOR1B}, TOR (target of rapamycin) [NCBI Gene 841427] {aka F2J10.19, F2J10_19, target of rapamycin}, LST8-1 (Transducin/WD40 repeat-like superfamily protein) [NCBI Gene 821339] {aka Lethal with Sec Thirteen 8-1}, cMyc [NCBI Gene 443447], GAL1 [NCBI Gene 5917448], CLQTL1 (cholesterol-lowering factor) [NCBI Gene 54501] {aka CLF}, FKBP12 (FK506-binding protein 12) [NCBI Gene 836556] {aka ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, ATFKBP12, FK506-binding protein 12, FKP12, IMMUNOPHILIN, MSJ1.19}, PK1 (protein-serine kinase 1) [NCBI Gene 820020] {aka ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ATPK1, ATPK6, ATS6K1, P70 RIBOSOMAL S6 KINASE}, NUFIP2 (nuclear FMR1 interacting protein 2) [NCBI Gene 57532] {aka 182-FIP, 82-FIP, FIP-82, NUFP2, PIG1}
- **Diseases:** chlorosis (MESH:D000747), toxicity (MESH:D064420)
- **Chemicals:** Rap (MESH:D020123), uracil (MESH:D014498), GA (MESH:D005708), amino acids (MESH:D000596), macrolide (MESH:D018942), tryptophan (MESH:D014364), ammonium hydroxide (MESH:D064753), DAPI (MESH:C007293), methanol (MESH:D000432), KOH (MESH:C029943), glucose (MESH:D005947), lithium acetate (MESH:C488804), Leu (MESH:D007930), sugar (MESH:D000073893), formic acid (MESH:C030544), nitrogen (MESH:D009584), TFA (MESH:D014269), SDS (MESH:D012967), glutamic acid (MESH:D018698), AMBIC (MESH:C027043), AZD (MESH:C546624), P (MESH:D010758), Peptides (MESH:D010455), galactose (MESH:D005690), hygromycin (MESH:C026273), glycolic acid (MESH:C031149), cysteine (MESH:D003545), acrylamide (MESH:D020106), MgCl2 (MESH:D015636), beta-Estradiol (MESH:D004958), silica (MESH:D012822), ACN (MESH:C032159), methionine (MESH:D008715), Canon EOS (-), glutamine (MESH:D005973), sucrose (MESH:D013395), pyro-glutamate (MESH:D011761), ATP (MESH:D000255), acetic acid (MESH:D019342), PVDF (MESH:C024865), glycerol (MESH:D005990), urea (MESH:D014508), EDTA (MESH:D004492), EtOH (MESH:D000431), acetone (MESH:D000096), octyl beta-D-glucopyranoside (MESH:C018619), auxin (MESH:D007210), DMSO (MESH:D004121), TCEP (MESH:C080938), carbon (MESH:D002244), H2O (MESH:D014867), chloroacetamide (MESH:C013874), histidine (MESH:D006639), NaCl (MESH:D012965), hygromycin B (MESH:D006921), asparagine (MESH:D001216), tungsten carbide (MESH:C002802), HEPES (MESH:D006531), proline (MESH:D011392), FA (MESH:D005492)
- **Species:** Oryza sativa (Asian cultivated rice, species) [taxon 4530], Trametes sp. L (species) [taxon 1081372], Salinicoccus sp. M (species) [taxon 1545528], Funaria hygrometrica (species) [taxon 29583], Ceratodon purpureus (species) [taxon 3225], Clostridium sp. ATCC 29733 (species) [taxon 1507], Sparganophilus sp. L (species) [taxon 1046293], Anthoceros angustus (species) [taxon 48387], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Allochromatium vinosum (species) [taxon 1049], Marchantia polymorpha (common liverwort, species) [taxon 3197], Solanum lycopersicum (tomato, species) [taxon 4081], Sphagnum magellanicum (species) [taxon 128215], Vicia faba (broad bean, species) [taxon 3906], Cauliflower mosaic virus (no rank) [taxon 10641], Chlamydomonas reinhardtii (species) [taxon 3055], Physcomitrium patens (species) [taxon 3218], Klebsormidium nitens (species) [taxon 105231], Selaginella moellendorffii (species) [taxon 88036], Mesotaenium endlicherianum (species) [taxon 184485], Streptomyces hygroscopicus (species) [taxon 1912], Bryophyta (mosses, clade) [taxon 3208], Sc [taxon 544725], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Ceratopteris richardii (species) [taxon 49495], Takakia lepidozioides (species) [taxon 37425], Mus musculus (house mouse, species) [taxon 10090], Ovis aries (domestic sheep, species) [taxon 9940], Cyanidioschyzon merolae (species) [taxon 45157], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], PX clade (clade) [taxon 569578], Vitis vinifera (wine grape, species) [taxon 29760], Auxenochlorella pyrenoidosa (species) [taxon 3078], Physcomitrella [taxon 3217], Takakia (genus) [taxon 37424], Homo sapiens (human, species) [taxon 9606], Populus trichocarpa (black cottonwood, species) [taxon 3694]
- **Mutations:** G57Q, S/T, Cys26, C in a 16, C80I, glutamine at position 58, C80, C26Y, R58E, M56K, 103_35S-T, Glu54, R58Q, W40D, E54Q, Cys80, Arg58, M56V, (CAA) for 30
- **Cell lines:** SW137-4b — Anopheles gambiae (African malaria mosquito), Spontaneously immortalized cell line (CVCL_Z623), -65'-27 — Mus musculus (Mouse), Hybridoma (CVCL_B7D0), RL57-2d — Rattus norvegicus (Rat), Carcinoma of the rat kidney, Cancer cell line (CVCL_A6ZH), ESPB003 — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_B4KF), TB50a — Oreochromis mossambicus x Oreochromis niloticus (Hybrid tilapia), Spontaneously immortalized cell line (CVCL_Y570), RL93a — Homo sapiens (Human), Nephropathic cystinosis, Finite cell line (CVCL_CW96)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12858634/full.md

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Source: https://tomesphere.com/paper/PMC12858634