# Assessing the Evolution and Influence of Medical Open Databases on Biomedical Research and Health Care Innovation: A 25-Year Perspective With a Focus on Privacy and Privacy-Enhancing Technologies

**Authors:** Albert Yang, Mei-Lien Pan, Henry Horng-Shing Lu, Chung-Yueh Lien, Da-Wei Wang, Chih-Hsiung Chen, Der-Cherng Tarng, Dau-Ming Niu, Shih-Hwa Chiou, Chun-Ying Wu, Ying - Chou Sun, Shih-Ann Chen, Shuu-Jiun Wang, Wayne Huey-Herng Sheu, Chi-Hung Lin

PMC · DOI: 10.2196/58954 · Journal of Medical Internet Research · 2026-01-30

## TL;DR

This paper examines how medical open databases have evolved over 25 years and their impact on research and healthcare, emphasizing privacy and privacy-enhancing technologies.

## Contribution

The paper provides a 25-year perspective on medical open databases, highlighting privacy challenges and the role of privacy-enhancing technologies like federated learning.

## Key findings

- Medical open databases have accelerated AI research and improved diagnostics and treatments.
- Privacy-enhancing technologies like federated learning help maintain patient confidentiality while enabling decentralized data use.
- Dynamic consent systems in Taiwan support transparent and continuous data-sharing preferences.

## Abstract

The integration of medical open databases with artificial intelligence (AI) technologies marks a transformative era in biomedical research and health care innovation. Over the past 25 years, initiatives like PhysioNet have revolutionized data access, fostering unprecedented levels of collaboration and accelerating medical discoveries. This rise of medical open databases presents challenges, particularly in harmonizing research enablement with patient confidentiality. In response, privacy laws such as the Health Insurance Portability and Accountability Act have been established, and privacy-enhancing technologies have been adopted to maintain this delicate balance. Privacy-enhancing technologies, including differential privacy, secure multiparty computation, and notably, federated learning (FL), have become instrumental in safeguarding personal health information. FL, in particular, represents a significant advancement by enabling the development and training of AI models on decentralized data. In Taiwan, significant strides have been made in aligning with these global data-sharing and privacy standards. We have actively promoted the sharing of medical data through the development of dynamic consent systems. These systems enable individuals to control and adjust their data-sharing preferences, ensuring transparency and continuity of consent in the ever-evolving landscape of digital health. Despite the challenges associated with privacy protections, the benefits, including improved diagnostics and treatment, are substantial. The availability of open databases has notably accelerated AI research, leading to significant advancements in medical diagnostics and treatments. As the landscape of health care research continues to evolve with open science and FL, the role of medical open databases remains crucial in shaping the future of medicine, promising enhanced patient outcomes and fostering a global research community committed to ethical integrity and privacy.

## Full-text entities

- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

114 references — full list in the complete paper: https://tomesphere.com/paper/PMC12858049/full.md

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Source: https://tomesphere.com/paper/PMC12858049