# High-dimensional phenotyping reveals novel macrophage-like and hybrid subsets within murine splenic conventional dendritic cells

**Authors:** Chunqing Yang, Qingjie Xue, Yu Feng, Wenjun Ding, Ying Lu, Qinqin Wang, Subhasis Barik, Subhasis Barik, Subhasis Barik

PMC · DOI: 10.1371/journal.pone.0341819 · PLOS One · 2026-01-30

## TL;DR

This study identifies new macrophage-like and hybrid cell subsets among mouse spleen dendritic cells, revealing their unique traits and potential roles in immunity.

## Contribution

The study identifies novel macrophage-like and hybrid dendritic cell subsets in mice with distinct phenotypic and functional characteristics.

## Key findings

- A macrophage-like subset (F4/80inter-lowCX3CR1+MERTK+) shows high resistance to clodronate depletion.
- A CCR2⁻Ly6C⁻ F4/80high APC subset is clodronate-sensitive and constitutes a small fraction of cDC2s.
- CD4⁺CD8α⁺ hybrid cells are found in both cDC1 and cDC2 populations, indicating novel dendritic cell plasticity.

## Abstract

Conventional dendritic cells (cDCs) are pivotal antigen-presenting cells (APCs) with critical roles in immune regulation, yet their subset classification remains ambiguous due to phenotypic overlap with macrophages and monocytes, particularly in the spleen. This study employed multi-parametric flow cytometry and clodronate liposome (CL) depletion to systematically re-evaluate splenic CD11chighMHCIIhigh cDCs in C57BL/6 mice. We identified three novel subsets: (1) a tissue-resident T-cell zone macrophage (TZM)-like population (F4/80inter-lowCX3CR1+MERTK+) constituting 0.59% of cDC2s with >10-fold CL-depletion resistance (p < 0.0001); (2) a resident F4/80high APC subset (CCR2 ⁻ Ly6C⁻) accounting for 2.7% of cDC2s with CL-sensitivity; (3) unconventional CD4⁺CD8α⁺ hybrids present in 2.57% of cDC2 and some cDC1s. These findings demonstrate unprecedented cDC plasticity driven by microenvironmental signals, revising conventional classification frameworks and proposing new targets for DC-based immunotherapies in autoimmunity and cancer. Our phenotypic mapping provides a foundational framework for future functional investigations into these novel subsets.

## Linked entities

- **Genes:** ITGAX (integrin subunit alpha X) [NCBI Gene 3687], H2 (histocompatibility-2, MHC) [NCBI Gene 111364], Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733], CX3CR1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 1524], MERTK (MER proto-oncogene, tyrosine kinase) [NCBI Gene 10461], CCR2 (C-C motif chemokine receptor 2) [NCBI Gene 729230], Ly6c (Ly6-C antigen) [NCBI Gene 56778], CD4 (CD4 molecule) [NCBI Gene 920], CD8A (CD8 subunit alpha) [NCBI Gene 925]
- **Chemicals:** clodronate (PubChem CID 25419)
- **Species:** Mus musculus (taxon 10090)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12857976/full.md

## References

24 references — full list in the complete paper: https://tomesphere.com/paper/PMC12857976/full.md

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Source: https://tomesphere.com/paper/PMC12857976