# Cryo-EM structure of human AQP11 reveals a trimeric architecture with a large pore

**Authors:** Shota Suzuki, Akiko Kamegawa, Daisuke Kozai, Kouki Nishikawa, Katsumasa Irie, Yoshinori Fujiyoshi

PMC · DOI: 10.1126/sciadv.aeb5769 · Science Advances · 2026-01-30

## TL;DR

The human AQP11 protein has a unique trimeric structure with a wide pore, allowing water and small solutes to pass through, offering new insights for drug development.

## Contribution

The first cryo-EM structure of human AQP11 reveals a trimeric architecture and a distinct pore with a novel NPC motif instead of the typical NPA motif.

## Key findings

- Human AQP11 forms a trimeric structure with seven transmembrane helices, including an N-terminal helix.
- The AQP11 pore is broader and more hydrophobic than canonical AQPs, with a unique NPC motif.
- The structure provides a framework for understanding AQP11's transport properties and designing specific inhibitors.

## Abstract

Aquaporin-11 (AQP-11) is an endoplasmic reticulum-localized water channel essential for renal development. Its structure and the molecular basis of its transport properties remained unknown. We analyzed the human AQP11 structure under cryo–electron microscopy at 2.3 Å resolution, revealing a trimeric architecture compared with other known tetrameric AQPs and a topology comprising seven transmembrane helices (Hs), including an additional N-terminal helix (H0). The channel pore is broader and more hydrophobic than that of canonical AQPs, and features a unique structure surrounding an Asn-Pro-Cys (NPC) sequence instead of the typical Asn-Pro-Ala (NPA) motif. These features provide a structural framework through which water and other small solutes can permeate AQP11. Our findings provide a blueprint for designing specific inhibitors to investigate the physiologic functions of AQP11.

The trimeric structure of AQP11 forms a wide pore for water and solutes and offers a previously unknown drug target.

## Linked entities

- **Genes:** AQP11 (aquaporin 11) [NCBI Gene 282679]
- **Proteins:** AQP11 (aquaporin 11)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** AQP5 (aquaporin 5) [NCBI Gene 362] {aka AQP-5, PPKB}, Aqp11 (aquaporin 11) [NCBI Gene 66333] {aka 1700015P13Rik, sjds}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, AQP11 (aquaporin 11) [NCBI Gene 282679] {aka AQPX1}, AQP4 (aquaporin 4) [NCBI Gene 361] {aka MIWC, MLC4, WCH4, hAQP4}, AQP7 (aquaporin 7) [NCBI Gene 364] {aka AQP7L, AQPap, GLYCQTL}, RHO (rhodopsin) [NCBI Gene 6010] {aka CSNBAD1, OPN2, RP4}, NPC1 (NPC intracellular cholesterol transporter 1) [NCBI Gene 4864] {aka NPC, POGZ, SLC65A1}, AQP12A (aquaporin 12A) [NCBI Gene 375318] {aka AQP-12, AQP12, AQPX2}
- **Diseases:** cystic renal dysplasia (MESH:D052177), congenital nephrotic syndrome (MESH:C535761), chronic kidney disease (MESH:D051436), injury (MESH:D014947), polycystic kidney disease (MESH:D007690), type 2 diabetes (MESH:D003924), renal failure (MESH:D051437)
- **Chemicals:** ethane (MESH:D004980), NaCl (MESH:D012965), Water (MESH:D014867), H2O2 (MESH:D006861), polyacrylamide (MESH:C016679), amphotericin (MESH:D000666), phospholipids (MESH:D010743), CO2 (MESH:D002245), proton (MESH:D011522), disulfide (MESH:D004220), sucrose (MESH:D013395), serine (MESH:D012694), glycerol (MESH:D005990), OG (MESH:C018619), EDTA (MESH:D004492), streptomycin (MESH:D013307), penicillin (MESH:D010406), carbon (MESH:D002244), chloroform (MESH:D002725), phenylmethylsulfonyl fluoride (MESH:D010664), DDM (MESH:C411362), SYPRO Ruby (MESH:C515601), Cys (MESH:D003545), POPC (MESH:C065191), DM (-), sodium dodecyl sulfate (MESH:D012967), valproic acid (MESH:D014635), nitrogen (MESH:D009584), lipid (MESH:D008055), imidazole (MESH:C029899)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** A to E, Cys227Ser, Trp260Cys, rs2276415, Pro158Ser, Cys101Ala, Cys101, Cys227
- **Cell lines:** Sf9+ — Spodoptera frugiperda (Fall armyworm), Spontaneously immortalized cell line (CVCL_0549), Sf900-III Serum Free Medium Complete — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_F847), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), DH10Bac — Mus musculus (Mouse), Transformed cell line (CVCL_6771), Expi293F — Homo sapiens (Human), Transformed cell line (CVCL_D615)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12857728/full.md

## References

41 references — full list in the complete paper: https://tomesphere.com/paper/PMC12857728/full.md

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Source: https://tomesphere.com/paper/PMC12857728