# Energy stress activates AMPK to arrest mitochondria via phosphorylation of TRAK1

**Authors:** Jill E. Falk, Tobias Henke, Sindhuja Gowrisankaran, Simone Wanderoy, Himanish Basu, Sinead Greally, Judith Steen, Thomas L. Schwarz

PMC · DOI: 10.1083/jcb.202501023 · The Journal of Cell Biology · 2026-01-30

## TL;DR

This paper explains how cells stop mitochondria from moving when energy is low, helping to keep energy production where it's most needed.

## Contribution

The study identifies a novel mechanism where AMPK phosphorylates TRAK1 to arrest mitochondria during energy stress.

## Key findings

- AMPK phosphorylates TRAK1 to arrest mitochondria when ATP levels are low.
- Mitochondrial arrest occurs without triggering mitophagy in response to antimycin A.
- Actin fibers accumulate near mitochondria to anchor them during energy stress.

## Abstract

Falk et al. identify a mechanism coupling mitochondrial movement to energy demand. When energy levels are low, the energy-sensing kinase AMPK phosphorylates the motor/adaptor protein TRAK1, arresting mitochondria via the actin cytoskeleton. This mechanism likely helps to position mitochondria where they are most needed.

Neuronal signaling requires large amounts of ATP, making neurons particularly sensitive to defects in energy homeostasis. Mitochondrial movement and energy production are therefore regulated to align local demands with mitochondrial output. Here, we report a pathway that arrests mitochondria in response to decreases in the ATP-to-AMP ratio, an indication that ATP consumption exceeds supply. In neurons and cell lines, low concentrations of the electron transport chain inhibitor antimycin A decrease the production of ATP and concomitantly arrest mitochondrial movement without triggering mitophagy. This arrest is accompanied by the accumulation of actin fibers adjacent to the mitochondria, which serve as an anchor that resists the associated motors. This arrest is mediated by activation of the energy-sensing kinase AMPK, which phosphorylates TRAK1. This mechanism likely helps maintain cellular energy homeostasis by anchoring energy-producing mitochondria in places where they are most needed.

## Linked entities

- **Genes:** TRAK1 (trafficking kinesin protein 1) [NCBI Gene 22906], PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 5562]
- **Proteins:** TRAK1 (trafficking kinesin protein 1), PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1)
- **Chemicals:** antimycin A (PubChem CID 14957)

## Full-text entities

- **Genes:** OGA (O-GlcNAcase) [NCBI Gene 10724] {aka MEA5, MGEA5, NCOAT}, MYH14 (myosin heavy chain 14) [NCBI Gene 79784] {aka DFNA4, DFNA4A, FP17425, MHC16, MYH17, NMHC II-C}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, OGT (O-linked N-acetylglucosamine (GlcNAc) transferase) [NCBI Gene 8473] {aka HINCUT-1, HRNT1, MRX106, O-GLCNAC, OGT1, XLID106}, MLRL (Myeloid leukemia-related gene (myeloid tumor suppressor)) [NCBI Gene 8201] {aka MLRG, MTS}, MYC [NCBI Gene 100379628], TRIM46 (tripartite motif containing 46) [NCBI Gene 80128] {aka GENEY, TRIFIC}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 5562] {aka AMPK, AMPK alpha 1, AMPKa1}, CAMKK2 (calcium/calmodulin dependent protein kinase kinase 2) [NCBI Gene 10645] {aka CAMKK, CAMKKB}, Hsp86-ps1 (heat shock protein 86, pseudogene 1) [NCBI Gene 111058] {aka 86kDa, Hsp86-2, Hsp90}, KIF5B (kinesin family member 5B) [NCBI Gene 3799] {aka HEL-S-61, KINH, KNS, KNS1, UKHC}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Prkaa1 (protein kinase, AMP-activated, alpha 1 catalytic subunit) [NCBI Gene 105787] {aka AMPKalpha1, C130083N04Rik}, FHL2 (four and a half LIM domains 2) [NCBI Gene 2274] {aka AAG11, DRAL, FHL-2, SLIM-3, SLIM3}, INF2 (inverted formin 2) [NCBI Gene 64423] {aka C14orf151, C14orf173, CMTDIE, FSGS5, pp9484}, RIC8B (RIC8 guanine nucleotide exchange factor B) [NCBI Gene 55188] {aka RIC8, hSyn}, EEF1A2 (eukaryotic translation elongation factor 1 alpha 2) [NCBI Gene 1917] {aka DEE33, EEF1AL, EF-1-alpha-2, EF1A, EIEE33, HS1}, AMPKalpha (AMP-activated protein kinase alpha subunit) [NCBI Gene 43904] {aka AK, AMPK, AMPK alpha, AMPK-alpha, Ampk, CG3051}, RAB5A (RAB5A, member RAS oncogene family) [NCBI Gene 5868] {aka RAB5}, TOMM20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 9804] {aka MAS20, MOM19, TOM20}, Vcl (vinculin) [NCBI Gene 22330] {aka 9430097D22}, PRKN (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 5071] {aka AR-JP, LPRS2, PARK2, PDJ}, SYNJ2BP (synaptojanin 2 binding protein) [NCBI Gene 55333] {aka ARIP2, OMP25}, PINK1 [NCBI Gene 101093033], Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, vinculin [NCBI Gene 101089215], PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, TRAK2 (trafficking kinesin protein 2) [NCBI Gene 66008] {aka ALS2CR3, CALS-C, GRIF-1, GRIF1, MILT2, OIP98}, SYN1 (synapsin I) [NCBI Gene 6853] {aka EPILX, EPILX1, MRX50, SYN1a, SYN1b, SYNI}, TRAK1 (trafficking kinesin protein 1) [NCBI Gene 22906] {aka DEE68, EIEE68, MILT1, OIP106}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, RHOT1 (ras homolog family member T1) [NCBI Gene 55288] {aka ARHT1, MIRO-1, MIRO1}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, SPIRE1 (spire type actin nucleation factor 1) [NCBI Gene 56907] {aka Spir-1}, milt (milton) [NCBI Gene 45683] {aka 2L6, CG13777, CG31630, CG43227, Dmel\CG43227, Dmel_CG13777}, Act79B (Actin 79B) [NCBI Gene 40444] {aka 143060_f_at, ACT4, Actin, ArpF, CG7478, D}, FKBP1AP4 (FKBP prolyl isomerase 1A pseudogene 4) [NCBI Gene 2285] {aka FKBP12, FKBP1P4}, GAPDH [NCBI Gene 493876], MYO6 (myosin VI) [NCBI Gene 4646] {aka DFNA22, DFNB37}
- **Diseases:** arrest (MESH:D006323), neurological diseases (MESH:D020271), mitochondrial arrest (MESH:D028361), pain (MESH:D010146), metabolic disease (MESH:D008659), ATC (MESH:D001260)
- **Chemicals:** Hoechst (-), ThiametG (MESH:C572247), phalloidin (MESH:D010590), TBS-T (MESH:C027647), L-glutamine (MESH:D005973), cysteine (MESH:D003545), acrylamide (MESH:D020106), ACN (MESH:C032159), Peptides (MESH:D010455), puromycin (MESH:D011691), Flux (MESH:C040639), Galactose (MESH:D005690), AntA (MESH:D000968), 2-deoxyglucose (MESH:D003847), LatA (MESH:C037067), TCA (MESH:D014238), ABC (MESH:C027043), CA (MESH:D002118), formaldehyde (MESH:D005557), phenol red (MESH:D010637), ADP (MESH:D000244), GlcNAc (MESH:D000117), nitrogen (MESH:D009584), SDS (MESH:D012967), TMRM (MESH:C401833), GlutaMAX (MESH:C054122), Glucose (MESH:D005947), pyruvate (MESH:D019289), formic acid (MESH:C030544), HCl (MESH:D006851), rapamycin (MESH:D020123), calcium phosphate (MESH:C020243), Amino acid (MESH:D000596), Sepharose (MESH:D012685), Lipofectamine 2000 (MESH:C086724), PBS (MESH:D007854), CO2 (MESH:D002245), Phosphopeptides (MESH:D010748), DTT (MESH:D004229), propionamide (MESH:C034666), water (MESH:D014867), NaCl (MESH:D012965), Triton X-100 (MESH:D017830), NP-40 (MESH:C010615), paraformaldehyde (MESH:C003043), Tween-20 (MESH:D011136), glycogen (MESH:D006003), polylysine (MESH:D011107), penicillin (MESH:D010406), streptomycin (MESH:D013307), EDTA (MESH:D004492), dimethyl sulfoxide (MESH:D004121), dPBS (MESH:C012939), CCCP (MESH:D002258), Oxygen (MESH:D010100), sorbitol (MESH:D013012), antimycin (MESH:C032456), Laemmli buffer (MESH:C088816), reactive oxygen species (MESH:D017382), sucrose (MESH:D013395)
- **Species:** Lentivirus (genus) [taxon 11646], Mycoplasma (genus) [taxon 2093], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Escherichia coli (E. coli, species) [taxon 562], Drosophila melanogaster (fruit fly, species) [taxon 7227], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** T834A, S919, M0202S, S200A, S11150H, E2611L, S919A, S201A, S719A, E0552S, K45R, S201
- **Cell lines:** HEK — Homo sapiens (Human), Transformed cell line (CVCL_0045), CRL-11268 — Homo sapiens (Human), Frontotemporal dementia, Transformed cell line (CVCL_HR73), Fibroblasts — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), pLVX — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_B0BB), HEK293T/17 — Homo sapiens (Human), Transformed cell line (CVCL_1926)

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12857616/full.md

## References

78 references — full list in the complete paper: https://tomesphere.com/paper/PMC12857616/full.md

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Source: https://tomesphere.com/paper/PMC12857616