# Isolation and typing techniques for circulating tumor cells

**Authors:** Shuyan Wu, Shunzi Rong, Anqi He, Yong Xia, Fuyan Xu

PMC · DOI: 10.1186/s40364-026-00901-7 · Biomarker Research · 2026-01-28

## TL;DR

This paper reviews techniques for isolating and analyzing rare cancer cells in blood, aiming to improve early diagnosis and treatment monitoring.

## Contribution

The paper provides a comprehensive review of current and emerging CTC isolation and typing technologies, highlighting challenges and future directions.

## Key findings

- Current CTC isolation methods include immune-based selection, physical property separation, and microfluidic platforms.
- CTC subtyping involves surface markers, genetic analysis, and proteomic profiling to understand tumor heterogeneity.
- Functional evaluation techniques like single-cell culture and in vivo tracking reveal CTC behavior and drug resistance.

## Abstract

Circulating tumor cells (CTCs) are tumor cells that detach from primary tumors or metastatic sites and enter the peripheral blood. As an important biomarker for liquid biopsy, their detection and analysis have offered a promising avenue in early diagnosis, treatment response monitoring, and prognosis evaluation of tumors. Given the extreme rarity and high heterogeneity of CTCs, efficient and accurate separation and typing have become a primary research focus. This article systematically reviews the mainstream technologies for CTC separation and enrichment, including positive/negative selection based on immune markers, size/deformation/charge separation based on physical properties, and emerging microfluidic platforms; Furthermore, we discuss subtyping strategies for CTC phenotypes and genotypes, encompassing the combined application of surface markers such as EpCAM, CK, Vimentin, gene mutation and copy number variation analysis, transcriptome and proteomic feature analysis, etc.; Additionally, we highlight advancements in functional evaluation techniques such as single-cell culture, metabolic labeling, and in vivo tracking which provide insights into the stemness, drug resistance, and metastatic propensity of CTCs. Finally, we explore the prospects of integrating artificial intelligence and multi omics in CTC typing, pointing out that despite rapid technological progress, challenges in standardization, detection sensitivity, and clinical validation remain significant hurdles to their routine translational application. The review aims to provide a technical framework and cutting-edge perspective for CTC research, and promote its application in personalized tumor management.

## Linked entities

- **Genes:** EPCAM (epithelial cell adhesion molecule) [NCBI Gene 4072], CHKA (choline kinase alpha) [NCBI Gene 1119], PRELID1 (PRELI domain containing 1) [NCBI Gene 737446]

## Full-text entities

- **Genes:** SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591] {aka SLUG, SLUGH, SLUGH1, SNAIL2, WS2D}, LAPTM4B (lysosomal protein transmembrane 4 beta) [NCBI Gene 55353] {aka LAPTM4beta, LC27}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, MTHFD1 (methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1) [NCBI Gene 4522] {aka CIMAH, MTHFC, MTHFD}, AURKA (aurora kinase A) [NCBI Gene 6790] {aka AIK, ARK1, AURA, BTAK, PPP1R47, STK15}, CDCP1 (CUB domain containing protein 1) [NCBI Gene 64866] {aka CD318, SIMA135, TRASK}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, TAS2R63P (taste 2 receptor member 63, pseudogene) [NCBI Gene 338413] {aka PS6, T2R63}, CEACAM8 (CEA cell adhesion molecule 8) [NCBI Gene 1088] {aka CD66b, CD67, CGM6, NCA-95}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CD74 (CD74 molecule) [NCBI Gene 972] {aka CLIP, DHLAG, HLADG, II, Ia-GAMMA, p33}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, MBNL1 (muscleblind like splicing regulator 1) [NCBI Gene 4154] {aka EXP, MBNL}, ALDH1A1 (aldehyde dehydrogenase 1 family member A1) [NCBI Gene 216] {aka ALDC, ALDH-E1, ALDH1, ALDH11, HEL-9, HEL-S-53e}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, CHGA (chromogranin A) [NCBI Gene 1113] {aka CGA, PHE5, PHES}, VIM (vimentin) [NCBI Gene 7431], PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, HDAC6 (histone deacetylase 6) [NCBI Gene 10013] {aka CPBHM, HD6, JM21, KDAC6, PPP1R90}, KRT20 (keratin 20) [NCBI Gene 54474] {aka CD20, CK-20, CK20, K20, KRT21}, KLK3 (kallikrein related peptidase 3) [NCBI Gene 354] {aka APS, KLK2A1, PSA, hK3}, AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, MET (MET proto-oncogene, receptor tyrosine kinase) [NCBI Gene 4233] {aka AUTS9, DA11, DFNB97, HGFR, RCCP2, c-Met}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, PRKCB (protein kinase C beta) [NCBI Gene 5579] {aka PKC-beta, PKCB, PKCI(2), PKCbeta, PRKCB1, PRKCB2}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, TRPS1 (transcriptional repressor GATA binding 1) [NCBI Gene 7227] {aka GC79, LGCR}, ABCG2 (ATP binding cassette subfamily G member 2 (JR blood group)) [NCBI Gene 9429] {aka ABC15, ABCP, BCRP, BMDP, CD338, CDw338}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, ASGR1 (asialoglycoprotein receptor 1) [NCBI Gene 432] {aka ASGPR, ASGPR1, CLEC4H1, HL-1}, EPCAM (epithelial cell adhesion molecule) [NCBI Gene 4072] {aka Ber-Ep4, BerEp4, DIAR5, EGP-2, EGP314, EGP40}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, KRT19 (keratin 19) [NCBI Gene 3880] {aka CK19, K19, K1CS}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, FUT4 (fucosyltransferase 4) [NCBI Gene 2526] {aka CD15, ELFT, FCT3A, FUC-TIV, FUTIV, LeX}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, GPX1 (glutathione peroxidase 1) [NCBI Gene 2876] {aka GPXD, GSHPX1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, KRT7 (keratin 7) [NCBI Gene 3855] {aka CK7, K2C7, K7, SCL}, FOLH1 (folate hydrolase 1) [NCBI Gene 2346] {aka FGCP, FOLH, GCP2, GCPII, NAALAD1, PSM}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291] {aka ACS3, BPES2, BPES3, CRS, CRS1, CSO}, EIF2AK3 (eukaryotic translation initiation factor 2 alpha kinase 3) [NCBI Gene 9451] {aka PEK, PERK, WRS}, TMSB10 (thymosin beta 10) [NCBI Gene 9168] {aka MIG12, TB10}, CEACAM6 (CEA cell adhesion molecule 6) [NCBI Gene 4680] {aka CD66c, CEAL, NCA, NCA-50/90}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, GPC3 (glypican 3) [NCBI Gene 2719] {aka DGSX, GTR2-2, MXR7, OCI-5, SDYS, SGB}, CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}, NGF (nerve growth factor) [NCBI Gene 4803] {aka Beta-NGF, HSAN5, NGFB}
- **Diseases:** digestive tract tumors (MESH:D004067), Prostate Cancer (MESH:D011471), IP (MESH:D007184), liver metastases (MESH:D009362), CTC (MESH:D009360), CRC (MESH:D015179), colorectal adenoma-carcinoma (MESH:C563365), PDAC (MESH:D021441), residual disease (MESH:D018365), MACS (OMIM:612348), breast and hepatocellular carcinoma (MESH:D001943), triple-negative breast cancer (MESH:D064726), gastrointestinal tumor (MESH:D005770), uveal melanoma (MESH:C536494), metastatic (MESH:D000092182), Castration (MESH:D064129), CDSS (MESH:D020195), lymph node metastasis (MESH:D008207), SCLC (MESH:D055752), stage I (MESH:D062706), Pancreatic cancer (MESH:D010190), sarcomas (MESH:D012509), gliomas (MESH:D005910), multiple myeloma (MESH:D009101), oral squamous carcinoma (MESH:D000077195), Abdominal (MESH:D000007), NSCLC (MESH:D002289), tumorigenic (MESH:D002471), lung cancer (MESH:D008175), leukemia (MESH:D007938), melanoma (MESH:D008545), HCC (MESH:D006528), breast, prostate, ovarian and colon cancers (MESH:D010051), Cancer (MESH:D009369), HE-CM-MNs (MESH:D015433), DHM (MESH:D046728), bladder cancer (MESH:D001749), gastric cancer (MESH:D013274), neuroendocrine tumors (MESH:D018358)
- **Chemicals:** sialic acids (MESH:D012794), Fe3O4 (MESH:C000499), abiraterone (MESH:C089740), acid (MESH:D000143), GO (MESH:C000628730), Iodixanol (MESH:C044834), MOFs (MESH:C040750), folate (MESH:D005492), glycans (MESH:D011134), lipid (MESH:D008055), MOF (MESH:C037042), TiO2 (MESH:C009495), gold (MESH:D006046), taxanes (MESH:D043823), Percoll (MESH:C016039), platinum (MESH:D010984), sugar (MESH:D000073893), CSMA (-), sorafenib (MESH:D000077157), PEG (MESH:D011092), PNIPAM (MESH:C052970), MXene (MESH:C000723374), Metal (MESH:D008670), black phosphorus (MESH:D010758), biotin (MESH:D001710), polydopamine (MESH:C568283), paclitaxel (MESH:D017239)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** R544Q, Q61K
- **Cell lines:** MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12857121/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12857121/full.md

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Source: https://tomesphere.com/paper/PMC12857121