# MicroRNA transcriptome analysis reveals the potential role of miRNAs in regulating adipocyte hyperplasia and hypertrophy

**Authors:** Ligang Ni, Zhanpeng Gu, Xiaoyan Wang, Junsheng Zhang, Chunbao Zhou, Yaqin Zhang, Huizhen Gao, Pan Xu

PMC · DOI: 10.3389/fgene.2026.1737852 · Frontiers in Genetics · 2026-01-16

## TL;DR

This study identifies miRNAs involved in regulating pig backfat development, focusing on adipocyte growth and metabolism.

## Contribution

The study reveals novel miRNAs and their regulatory roles in porcine backfat development through transcriptome analysis.

## Key findings

- 292 known and 274 novel miRNAs were identified in porcine backfat at different developmental stages.
- Key miRNAs like ssc-miR-1343 target genes involved in adipocyte hyperplasia and hypertrophy.
- Pathways such as PI3K-Akt and mTOR are linked to adipocyte differentiation and metabolism.

## Abstract

MicroRNAs (miRNAs) play a crucial role in regulating the development of backfat, yet their specific regulatory functions remain incompletely understood. The main objective of this study was to reveal the regulatory mechanism of miRNAs in porcine backfat development, and the molecular regulatory mechanisms of adipocyte hyperplasia and hypertrophy.

In this study, we used high‐throughput sequencing technology to construct miRNA expression profiles of backfat tissue from Sujiang pigs at four developmental stages: 1, 3, 6, and 8 months old. A total of 292 known miRNAs and 274 novel miRNAs were identified. Through a comprehensive analysis of the miRNA and messenger RNA (mRNA) transcriptomes, we discovered many important mRNA‐miRNA pairs during porcine backfat development. Functional analysis revealed that the PI3K‐Akt signaling pathway, signaling pathways regulating pluripotency of stem cells, and mTOR signaling pathway as pivotal pathways related to adipocyte differentiation and hyperplasia. Butanoate metabolism, fatty acid metabolism, and fatty acid degradation were identified as pivotal pathways related to adipocyte metabolism and hypertrophy. Ssc‐miR‐1343, ssc‐miR‐1307, ssc‐miR‐1249, ssc‐miR‐331-3p, ssc‐miR‐296‐5p, ssc‐miR‐149, ssc‐miR‐361‐3p, and ssc‐miR‐615, which were identified as hub miRNAs in the miRNA‐mRNA regulatory network, may play crucial roles in regulating backfat development. Further validation revealed that ssc‐miR‐1343 can directly target the TCF3 and FASN genes at different backfat developmental stages, potentially regulating adipocyte hyperplasia and hypertrophy.

The comparative miRNA and mRNA transcriptomes analysis of porcine backfat tissue revealed the molecular regulatory mechanisms involved in porcine backfat development, providing useful information for the future breeding of pigs.

## Linked entities

- **Genes:** TCF3 (transcription factor 3) [NCBI Gene 6929], FASN (fatty acid synthase) [NCBI Gene 2194]
- **Species:** Sus scrofa (taxon 9823)

## Full-text entities

- **Genes:** MIR149 (microRNA mir-149) [NCBI Gene 100526400] {aka ssc-mir-149}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 100127359] {aka FRAP1}, MIR1343 (microRNA mir-1343) [NCBI Gene 100628345] {aka ssc-mir-1343}, MIR1307 (microRNA mir-1307) [NCBI Gene 100498737] {aka ssc-mir-1307}, MIR3613 (microRNA mir-3613) [NCBI Gene 104794450] {aka ssc-mir-3613}, MIR615 (microRNA mir-615) [NCBI Gene 100628344] {aka ssc-mir-615}, FASN (fatty acid synthase) [NCBI Gene 397561], TCF3 (transcription factor 3) [NCBI Gene 100524070] {aka ITF1, TCF3(E47), TCF3A, TCF3B}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 100126861] {aka Akt, PKB}
- **Diseases:** hypertrophy (MESH:D006984), adipocyte hyperplasia (MESH:D006965)
- **Chemicals:** Butanoate (-), fatty acid (MESH:D005227)
- **Species:** Sus scrofa (pig, species) [taxon 9823]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12856495/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12856495/full.md

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Source: https://tomesphere.com/paper/PMC12856495