# Engineering Kluyveromyces marxianus for 3-hydroxypropionic acid production at elevated temperature from Jerusalem artichoke tubers and crude glycerol

**Authors:** Jiacheng Li, Zhongmei Hu, Yanjie Li, Hao Zha, Yujie Xie, Mingtao Zhao, Lili Ren, Biao Zhang

PMC · DOI: 10.1016/j.synbio.2026.01.008 · 2026-01-20

## TL;DR

Scientists engineered a heat-tolerant yeast to efficiently produce a key chemical for biodegradable plastics from plant material and waste glycerol at high temperatures.

## Contribution

The novel contribution is the first thermotolerant yeast-based bioprocess for 3-HP production from non-food feedstocks at elevated temperatures.

## Key findings

- Engineered yeast produced 32.31 g/L of 3-HP at 42°C from Jerusalem artichoke tubers.
- 3-HP titer reached 33.15 g/L using pure glycerol at 42°C with optimized metabolic pathways.
- The process reduced cooling water use by 60% and CO2 emissions by 27.1 tons annually per 1000-ton fermenter.

## Abstract

This study engineered the thermotolerant yeast Kluyveromyces marxianus to produce 3-hydroxypropionic acid (3-HP), a key precursor for biodegradable plastics, via the malonyl-CoA pathway using non-food feedstocks. The 3-HP titer was further increased through deleting Adh2A and Ach1, which prevents the synthesis of byproducts ethanol and acetic acid. Using Jerusalem artichoke tuber powder, engineered strain produced 27.32 and 32.31 g/L of 3-HP at 37 °C and 42 °C through fed-batch fermentation. Metabolic reconstruction replaced the native FADH2-dependent glycerol pathway (GUT1/GUT2) with an NADH-generating GDH1/DAK1 pathway, significantly enhancing glycerol utilization and increasing intracellular NADH supply by 62 %. Overexpression of Utr1 can further enhance the NADPH supply. Combined with heterologous expression of a codon-optimized, high-activity malonyl-CoA reductase (MCR) mutant (MCRN940V/K1106W/S1114R), the engineered strain achieved 3-HP titers of 33.15 g/L in fed-batch fermentation using pure glycerol at 42 °C. Crucially, it also produced 26.57 g/L 3-HP directly from crude glycerol at 42 °C. The thermotolerant fermentation at 42 °C, unprecedented for yeast-based 3-HP synthesis, reduces cooling water consumption by approximately 60 %, translating to an estimated annual CO2 reduction of 27.1 tons per 1000-ton fermenter. This work establishes a cost-effective, industrially scalable bioprocess for valorizing Jerusalem artichoke tubers and crude glycerol into a key platform chemical for biodegradable plastics and green chemicals, leveraging the strain's substrate flexibility, process robustness, and significant environmental advantages.

## Linked entities

- **Genes:** ACOT7 (acyl-CoA thioesterase 7) [NCBI Gene 11332], GUT1 (Exostosin family protein) [NCBI Gene 836306], gut-2 (U6 snRNA-associated Sm-like protein LSm2) [NCBI Gene 179833], GLUD1 (glutamate dehydrogenase 1) [NCBI Gene 2746], Dak1 (cytidine/uridine monophosphate kinase Dak1) [NCBI Gene 654848], UTR1 (UDP-galactose transporter 1) [NCBI Gene 814811], NR3C2 (nuclear receptor subfamily 3 group C member 2) [NCBI Gene 4306]
- **Chemicals:** 3-hydroxypropionic acid (PubChem CID 2365), malonyl-CoA (PubChem CID 644066), FADH2 (PubChem CID 446013), NADH (PubChem CID 439153), NADPH (PubChem CID 5884), glycerol (PubChem CID 753), acetic acid (PubChem CID 176), ethanol (PubChem CID 702)
- **Species:** Kluyveromyces marxianus (taxon 4911)

## Full-text entities

- **Chemicals:** FADH2 (MESH:C058805), water (MESH:D014867), NADPH (MESH:D009249), CO2 (MESH:D002245), NADH (MESH:D009243), glycerol (MESH:D005990), acetic acid (MESH:D019342), ethanol (MESH:D000431), malonyl-CoA (MESH:D008316), 3-HP (MESH:C031601)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Kluyveromyces marxianus (species) [taxon 4911]
- **Mutations:** S1114R, K1106W

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12856427/full.md

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Source: https://tomesphere.com/paper/PMC12856427