# SCFAs’ pleiotropic role in pathogenesis and salutogenesis: mechanisms in exacerbation and regulation of inflammation and fibrosis from gut to host

**Authors:** Saleem Ahmad, Sikander Ali, Asad Ur Rehman, Ikram Ul Haq, Iram Liaqat, Muhammad Nauman Aftab, Tadesse Shume

PMC · DOI: 10.1099/jmm.0.002117 · 2026-01-29

## TL;DR

Short-chain fatty acids (SCFAs) have both harmful and beneficial effects on inflammation and fibrosis, depending on factors like cell type and dose, and understanding these dual roles is crucial for accurate research.

## Contribution

This paper highlights the underappreciated pro-inflammatory and pleiotropic roles of SCFAs alongside their well-known anti-inflammatory effects.

## Key findings

- SCFAs can trigger vascular inflammation via pathways like NFκB and reactive oxygen species.
- SCFAs show cell-specific effects, promoting inflammation in some immune cells while suppressing it in others.
- SCFAs contribute to fibrotic remodelling in both gut and distant tissues.

## Abstract

SCFAs exert dual roles in health and disease by modulating immune responses, inflammation, and fibrosis across organs, influencing salutogenesis and pathogenesis through dose, cell-specific, and contextual factors.

Short-chain fatty acids (SCFAs) are essential gut microbiota metabolites with significant effects that are well recognized for their anti-inflammatory benefits, yet their pro-inflammatory and pleiotropic properties have received little attention in literature. SCFAs produced by gut bacteria from one to five carbons engage with a network of G-protein-coupled receptors such as FFAR2/GPR43, FFAR3/GPR41, Olfr78 and monocarboxylate transporters (MCT-1–MCT-4) to influence host physiology. Through established signalling pathways including Mitogen-Activated Protein Kinase (MAPK), mTOR and Gαi/Gαq, SCFAs serve as acetyl CoA precursors that facilitate lipogenesis, gluconeogenesis and cholesterol synthesis while also activating NFκB and reactive oxygen species pathways (e.g. succinate), potentially resulting in vascular inflammation. While SCFAs typically suppress inflammation through histone deacetylase inhibition and immune regulation, pro-inflammatory roles emerge in specific settings. Within immune compartments, SCFAs exhibit cell-specific effects, from priming cell-driven pro-inflammatory roles in one type of immune cell to suppression of inflammatory mediators in others. Moreover, SCFAs can lead to fibrotic remodelling, an intensified form of inflammation in both intestinal and distant tissues. This review aims to demonstrate the complex biphasic bridge between aggravation and resolution influenced by factors such as cell type, study methodologies, receptors, dose dependency, age, metabolic changes and inherent properties and concludes with the significance of particular and accurate research approaches to mimic the true environment and observe SCFA effects employing humanized mice, gut-on-chip systems and organoids for more precise and relevant results.

## Linked entities

- **Proteins:** Or51e2 (olfactory receptor family 51 subfamily E member 2), CMA1 (chymase 1), SLC16A7 (solute carrier family 16 member 7), SLC16A3 (solute carrier family 16 member 3), SLC16A4 (solute carrier family 16 member 4), MAPK (mitogen activated kinase-like protein), MTOR (mechanistic target of rapamycin kinase), GAI (DELLA protein GAI), GNAQ (G protein subunit alpha q), NFKB1 (nuclear factor kappa B subunit 1)
- **Chemicals:** acetyl CoA (PubChem CID 444493), succinate (PubChem CID 160419)

## Full-text entities

- **Genes:** SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}, CCN2 (cellular communication network factor 2) [NCBI Gene 1490] {aka CTGF, HCS24, IBP-8, IGFBP8, KMD, NOV2}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TLR5 (toll like receptor 5) [NCBI Gene 7100] {aka MELIOS, SLE1, SLEB1, TIL3}, Cxcl5 (C-X-C motif chemokine ligand 5) [NCBI Gene 20311] {aka AMCF-II, Cxcl6, ENA-78, GCP-2, LIX, Scyb5}, Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 14825] {aka Fsp, Gro1, KC, Mgsa, N51, Scyb1}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, Sucnr1 (succinate receptor 1) [NCBI Gene 84112] {aka Gpr91}, UBE2M (ubiquitin conjugating enzyme E2 M) [NCBI Gene 9040] {aka UBC-RS2, UBC12, hUbc12}, Il6 (interleukin 6) [NCBI Gene 24498] {aka ILg6, Ifnb2}, NCR3 (natural cytotoxicity triggering receptor 3) [NCBI Gene 259197] {aka 1C7, CD337, LY117, MALS, NKp30}, Hdac3 (histone deacetylase 3) [NCBI Gene 15183], Gnaq (guanine nucleotide binding protein, alpha q polypeptide) [NCBI Gene 14682] {aka 1110005L02Rik, 6230401I02Rik, Dsk1, Dsk10, Galphaq, Gq}, MMRN1 (multimerin 1) [NCBI Gene 22915] {aka ECM, EMILIN4, GPIa*, MMRN}, FFAR3 (free fatty acid receptor 3) [NCBI Gene 2865] {aka FFA3R, GPR41}, Nfkbia (nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha) [NCBI Gene 18035] {aka Nfkbi}, TNC (tenascin C) [NCBI Gene 3371] {aka 150-225, DFNA56, GMEM, GP, HXB, JI}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, SLC16A1 (solute carrier family 16 member 1) [NCBI Gene 6566] {aka HHF7, MCT, MCT1, MCT1D}, Ccl3 (C-C motif chemokine ligand 3) [NCBI Gene 25542] {aka MIP-1a, Scya3}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, IL15 (interleukin 15) [NCBI Gene 3600] {aka IL-15}, Il18 (interleukin 18) [NCBI Gene 29197] {aka IL-1 gamma, IL-18}, SLC5A12 (solute carrier family 5 member 12) [NCBI Gene 159963] {aka SMCT2}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, Ccl4 (C-C motif chemokine ligand 4) [NCBI Gene 116637] {aka Mip1-b, Scya4}, Slc16a3 (solute carrier family 16 (monocarboxylic acid transporters), member 3) [NCBI Gene 80879] {aka Mct3, Mct4}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Il5 (interleukin 5) [NCBI Gene 24497], Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, ELN (elastin) [NCBI Gene 2006] {aka ADCL1, SVAS, WBS, WS}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, Igh-V7183 (immunoglobulin heavy chain (V7183 family)) [NCBI Gene 16059] {aka B9-scFv, IgG, IgH, IgVH1(VSG), VH7183, VI24H}, Mapk14 (mitogen-activated protein kinase 14) [NCBI Gene 26416] {aka CSBP2, Crk1, Csbp1, Mxi2, PRKM14, PRKM15}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Tnf (tumor necrosis factor) [NCBI Gene 24835] {aka RATTNF, TNF-alpha, Tnfa}, IL5 (interleukin 5) [NCBI Gene 3567] {aka EDF, IL-5, TRF}, Il18 (interleukin 18) [NCBI Gene 16173] {aka Igif, Il-18}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, IL3 (interleukin 3) [NCBI Gene 3562] {aka IL-3, MCGF, MULTI-CSF}, HCAR2 (hydroxycarboxylic acid receptor 2) [NCBI Gene 338442] {aka GPR109A, HCA2, HM74a, HM74b, NIACR1, PUMAG}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, SLC16A3 (solute carrier family 16 member 3) [NCBI Gene 9123] {aka MCT 3, MCT 4, MCT-3, MCT-4, MCT3, MCT4}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, KLRK1 (killer cell lectin like receptor K1) [NCBI Gene 22914] {aka CD314, D12S2489E, KLR, NKG2-D, NKG2D}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, TNFSF10 (TNF superfamily member 10) [NCBI Gene 8743] {aka APO2L, Apo-2L, CD253, TANCR, TL2, TNLG6A}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 81503] {aka CINC-1, Gro1}, IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, NEDD8 (NEDD8 ubiquitin like modifier) [NCBI Gene 4738] {aka NEDD-8}, Ffar2 (free fatty acid receptor 2) [NCBI Gene 233079] {aka GPCR43, Gpr43}
- **Diseases:** tissue damage (MESH:D017695), Infections (MESH:D007239), heart hypertrophy (MESH:D006332), impaired immunity (MESH:D020274), CD (MESH:D003424), hyperphagia (MESH:D006963), obese (MESH:D009765), autoimmune illnesses (MESH:D001327), hypertension (MESH:D006973), acute and chronic inflammatory illnesses (MESH:D020275), pulmonary fibrosis (MESH:D011658), liver injury (MESH:D017093), colitis (MESH:D003092), demyelination (MESH:D003711), gut (MESH:C536735), vascular dysfunction (MESH:D002561), LDL (MESH:D006938), UC (MESH:D003093), Fibrosis (MESH:D005355), villous atrophy (MESH:C564019), MODS (MESH:D009102), Cancerous (MESH:D009369), hepatic carcinoma (MESH:D006528), leukemic (MESH:D007938), T2D (MESH:D003924), neuro-axonal damage (MESH:D001480), enterocolitis (MESH:D004760), RA (MESH:D001172), neurological diseases (MESH:D020271), IBD (MESH:D015212), systemic inflammatory response syndrome (MESH:D018746), cardiac, kidney and liver fibrosis (MESH:D008103), bleeding (MESH:D006470), asthma (MESH:D001249), SLE (MESH:D008180), hereditary illness (MESH:D030342), intestinal disorder (MESH:D007410), Chronic spontaneous urticaria (MESH:D000080223), gut motility disorders (MESH:D015835), allergic rhinitis (MESH:D065631), CF (MESH:D003550), atopic dermatitis (MESH:D003876), pancreatitis (MESH:D010195), ACVD (MESH:D050197), neurological problems (MESH:D009461), diabetes (MESH:D003920), inflammatory cytokines (MESH:D000080424), T1D (MESH:D003922), metabolic syndrome (MESH:D024821), NAFLD (MESH:D065626), glucose intolerance (MESH:D018149), chronic (MESH:D002908), viral (MESH:D014777), insulin resistance (MESH:D007333), hepatitis (MESH:D056486), immunity (MESH:D007154), hypoxia (MESH:D000860), calcification (MESH:D002114), toxic megacolon (MESH:D008532), Dysbiosis (MESH:D064806)
- **Chemicals:** fatty acid (MESH:D005227), calcium (MESH:D002118), superoxide (MESH:D013481), Butyrate (MESH:D002087), TCA (MESH:D014238), lipid (MESH:D008055), 2-methyl butyrate (MESH:C019475), choline (MESH:D002794), valproate (MESH:D014635), dietary fibre (MESH:D004043), Cholesteryl Butyrate (MESH:C092211), sugar (MESH:D000073893), lignan (MESH:D017705), glucose (MESH:D005947), IP3 (MESH:D015544), pentanoate (MESH:D014631), phosphatidylinositol 4,5-bisphosphate (MESH:D019269), Propionate (MESH:D011422), carbon tetrachloride (MESH:D002251), C2, 3 and 4 (-), NO (MESH:D009569), glycolipid (MESH:D006017), lactate (MESH:D019344), SCFA (MESH:D005232), TMAO (MESH:C005855), MUFAs (MESH:D005229), diacylglycerol (MESH:D004075), carbon (MESH:D002244), phosphate (MESH:D010710), Acetate (MESH:D000085), propanediol (MESH:D011409), prebiotics (MESH:D056692), lipoic acid (MESH:D008063), TNBS (MESH:D014302), ethanol (MESH:D000431), TSA (MESH:C012589), Succinate (MESH:D019802), ATP (MESH:D000255), PHI (MESH:C542294), ROS (MESH:D017382), iso-butyrate (MESH:D058610), Acetyl-CoA (MESH:D000105), bile acid (MESH:D001647), Cholesterol (MESH:D002784), C4 (MESH:C058899), palmitate (MESH:D010168), polysaccharides (MESH:D011134), TMA (MESH:C023336), alcohol (MESH:D000438), acrylate (MESH:C036658), LPS (MESH:D008070), C2 (MESH:C023714)
- **Species:** Enterobacteriaceae (enterobacteria, family) [taxon 543], Bifidobacterium (genus) [taxon 1678], Clostridium butyricum (species) [taxon 1492], Shigella (genus) [taxon 620], Collinsella (genus) [taxon 102106], Fibrobacter succinogenes (species) [taxon 833], Salmonella (genus) [taxon 590], Syntrophomonas sp. (species) [taxon 2053627], Staphylococcus aureus (species) [taxon 1280], Eubacterium (genus) [taxon 1730], Roseburia hominis (species) [taxon 301301], Pseudomonas (RNA similarity group I, genus) [taxon 286], Prevotella intermedia (species) [taxon 28131], Rattus norvegicus (brown rat, species) [taxon 10116], Escherichia coli (E. coli, species) [taxon 562], Thermoanaerobacter (Clostridium cluster V, genus) [taxon 1754], Acetobacterium (genus) [taxon 33951], Propionibacterium (genus) [taxon 1743], Ralstonia (genus) [taxon 48736], Curvibacter (genus) [taxon 281915], Mus musculus (house mouse, species) [taxon 10090], Acetoanaerobium (genus) [taxon 186831], Mycoplasmatota (phylum) [taxon 544448], Pelobacter (genus) [taxon 18], Klebsiella pneumoniae (species) [taxon 573], Homo sapiens (human, species) [taxon 9606], Coprococcus (genus) [taxon 33042], Clostridioides difficile (species) [taxon 1496], Burkholderiales (order) [taxon 80840], Rodentia (rodent, order) [taxon 9989], Tannerella forsythia (species) [taxon 28112], Porphyromonas gingivalis (species) [taxon 837], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], gut metagenome (species) [taxon 749906], Bacillota (clostridial firmicutes, phylum) [taxon 1239]
- **Mutations:** A2A
- **Cell lines:** THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12856160/full.md

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Source: https://tomesphere.com/paper/PMC12856160