# Structural elucidation, biological significance and computational approach of Copper(ii), Nickel(ii) and Cobalt(ii) with bidentate schiff base of N-(Napthalene-1-ylmethylene)isonicotinohydrazide

**Authors:** Md. Ashraful Islam, Faria Tasnim, Md. Toukir Biswas, Md. Sajib Hossain, Md. Eram Hosen, Md. Robiul Islam, Md. Ali Asraf, Md. Faruk Hossen, Al-Anood M. Al-Dies, Md. Kudrat-E-Zahan, Zsolt Tóth, Magdi E. A. Zaki

PMC · DOI: 10.1038/s41598-025-23208-3 · 2026-01-29

## TL;DR

This paper explores new metal complexes with antibacterial and antioxidant properties, offering potential dual-function therapeutic agents.

## Contribution

The study introduces novel metal complexes with bidentate schiff base ligand showing promising antibacterial and antioxidant activities.

## Key findings

- Ni(II) complex showed highest antibacterial activity against multiple bacteria.
- Cu(II) complex was most effective antioxidant with IC50 of 187.81 ± 1.42 µg/mL.
- Molecular docking and simulations suggest Cu(II) and Co(II) complexes have stable interactions.

## Abstract

The increasing prevalence of antibiotic-resistant bacteria and oxidative stress-related diseases underscores the need for novel therapeutic agents with potential dual functionality. In this research, a schiff base ligand, N-(Napthalene-1-ylmethylene)isonicotinohydrazide, was synthesized and complexed with Copper(II), Nickel(II), and Cobalt(II) ions. Characterization of the compounds using various spectroscopic and analytical techniques confirmed successful complex formation and structural stability. Antibacterial testing through the disc diffusion method revealed that the Ni(II) complex exhibited the highest antibacterial activity, with significant inhibition against Staphylococcus aureus, Bacillus subtilis, Escherichia coli, and Shigella flexneri. The antioxidant activity, evaluated via DPPH radical scavenging, showed that the Cu(II) complex was the most effective with an IC50 value of 187.81 ± 1.42 µg/mL. Molecular docking studies against DNA gyrase (PDB ID: 7P2M) predicted the Ni(II) complex as the best binder (–9.9 kcal/mol), suggesting strong initial affinity. Complementary molecular dynamic simulations further demonstrated that Cu(II) and Co(II) complexes maintained the most stable protein-ligand interactions under dynamic conditions, highlighting their potential as robust inhibitors. ADMET predictions indicated favorable pharmacokinetic and toxicity profiles, though recognized as preliminary. DFT calculations confirmed stable geometries and showed a reduction of the HOMO–LUMO energy gap from 4.21 eV (ligand) to 2.85 eV (Ni complex), consistent with enhanced reactivity and biological activity. Mapping of electron density and atomic charge analysis identified potential nucleophilic attack sites, reinforcing the complexes’ therapeutic potential in combating bacterial infections and oxidative stress.

## Linked entities

- **Chemicals:** Copper(II) (PubChem CID 27099), Nickel(II) (PubChem CID 934), Cobalt(II) (PubChem CID 104729)
- **Species:** Staphylococcus aureus (taxon 1280), Bacillus subtilis (taxon 1423), Escherichia coli (taxon 562), Shigella flexneri (taxon 623)

## Full-text entities

- **Genes:** CYP1A2 (cytochrome P450 family 1 subfamily A member 2) [NCBI Gene 1544] {aka CP12, CYPIA2, P3-450, P450(PA)}, CYP2C9 (cytochrome P450 family 2 subfamily C member 9) [NCBI Gene 1559] {aka CPC9, CYP2C, CYP2C10, CYPIIC9, P450-2C9, P450IIC9}, CYP3A4 (cytochrome P450 family 3 subfamily A member 4) [NCBI Gene 1576] {aka CP33, CP34, CYP3A, CYP3A3, CYPIIIA3, CYPIIIA4}, CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557] {aka CPCJ, CYP2C, CYPIIC17, CYPIIC19, P450C2C, P450IIC19}
- **Diseases:** deaths (MESH:D003643), gram (MESH:D016908), acute toxicity (MESH:D000208), ADMET (MESH:C562790), fungal (MESH:D009181), Bacterial infections (MESH:D001424), neurodegenerative diseases (MESH:D019636), AMR (MESH:D060467), infection (MESH:D007239), carcinogenic (MESH:D011230), Toxicity (MESH:D064420), infectious diseases (MESH:D003141), ocular degeneration (MESH:D009410), cancer (MESH:D009369)
- **Chemicals:** OH (MESH:C031356), O (MESH:D010100), [L + H] (MESH:D007986), Copper (MESH:D003300), ROS (MESH:D017382), 1,1-diphenyl-2-picrylhydrazyl (MESH:C004931), Schiff base (MESH:D012545), 1-naphthaldehyde (MESH:C009840), C (MESH:D002244), chloroform (MESH:D002725), DMSO (MESH:D004121), CaCl2 (MESH:D002122), ethanol (MESH:D000431), acetone (MESH:D000096), H (MESH:D006859), BHT (MESH:D002084), imine (MESH:D007097), aldehyde (MESH:D000447), water (MESH:D014867), NaCl (MESH:D012965), azomethine (MESH:C512188), hydrazone (MESH:D006835), hydrazide (MESH:D006834), AMES (MESH:C017501), L (MESH:D007930), platinum (MESH:D010984), methanol (MESH:D000432), Ciprofloxacin (MESH:D002939), amide (MESH:D000577), Cu-O (MESH:C030973), KBr (MESH:C039004), fluoroquinolones (MESH:D024841), Kanamycin (MESH:D007612), diethyl ether (MESH:D004986), C-O (MESH:D003035), N (MESH:D009584), pyridine (MESH:C023666), Isoniazid (MESH:D007538), NH3 (MESH:D000641), Ni (MESH:D009532), ketone (MESH:D007659), Metal (MESH:D008670), DMF (MESH:D004126), C17H13N3O (-)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Bacillus cereus (species) [taxon 1396], Escherichia coli K-12 (strain) [taxon 83333], Homo sapiens (human, species) [taxon 9606], Bacillus subtilis (species) [taxon 1423], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus aureus (species) [taxon 1280], Shigella flexneri (species) [taxon 623]
- **Cell lines:** CoL — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_A9UI)

## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12855983/full.md

---
Source: https://tomesphere.com/paper/PMC12855983