# EIF4A3‐Induced Circular RNA circSnd1 Promotes Muscle Atrophy and Muscle Ageing by Stabilizing EEF1A1

**Authors:** Jin Li, Bing Jin, Yuwei Yan, Yuying Chen, Xiaohang Yin, Xinyi Ren, Qian Li, Jingying Chen, Siqi Wang, Tingting Yang, Yanan Zhang, Qiumeng Nie, Dongchao Lu, Ming Wu, Yan Yu, Lei Chen, Tarun Keswani, Guoping Li, Dragos Cretoiu, T. Scott Bowen, Junjie Xiao, Yongjun Zheng

PMC · DOI: 10.1002/jcsm.70210 · 2026-01-29

## TL;DR

This study identifies a circular RNA called circSnd1 that promotes muscle atrophy and aging by stabilizing a protein involved in translation.

## Contribution

The study discovers circSnd1 as a novel circular RNA involved in muscle atrophy and aging, and reveals its stabilization mechanism involving EEF1A1.

## Key findings

- circSnd1 is upregulated in multiple muscle atrophy models and aged muscle in humans and mice.
- circSnd1 promotes muscle atrophy and aging by stabilizing EEF1A1 through interaction with FAT10.
- Inhibiting circSnd1 ameliorates muscle atrophy in cellular and mouse models.

## Abstract

Muscle atrophy is a common complication of ageing, and many chronic conditions, lacks defined therapeutic interventions. It is still mostly unknown how circular RNAs contribute to muscle atrophy.

circRNA sequencing and quantitative real‐time PCR were performed to detect the changed circRNAs in muscle atrophy models and aged muscle. Then the gain‐of‐function and loss‐of‐function experiments were used to investigate the function of circSnd1 in muscle atrophy and muscle ageing. Furthermore, we used RIP‐MS and RIP assay to determine the downstream and upstream mechanism of circSnd1 in muscle atrophy.

Here, we characterized the function and mechanism of highly species‐conserved circRNA derived from staphylococcal nuclease and Tudor domain containing 1 gene (named circSnd1) in muscle atrophy. CircSnd1 is upregulated in many types of muscle atrophy models in both in vivo and in vitro (all p < 0.01). Meanwhile, circSnd1 is also higher expressed in aged muscle in humans (+2.2‐fold, n = 5, p < 0.05), mice (+43.96%, n = 6, p < 0.05) and myotubes (+42.21%, n = 6, p < 0.05). Functional analyses show that circSnd1 promotes muscle atrophy and muscle ageing at the cellular level and mouse level while repressing it ameliorates multiple types of muscle atrophy (all p < 0.05). Mechanistically, the RNA binding protein eukaryotic translation initiation factor 4A3 (EIF4A3) can bind to the intron flanking sequence of circSnd1 to induce circSnd1 cyclization and increase circSnd1 expression in muscle atrophy. In addition, circSnd1 promotes the binding between human HLA‐F adjacent transcript 10 (FAT10) and eukaryotic translation elongation factor 1 alpha 1 (EEF1A1). FAT10 competes with ubiquitin for binding with EEF1A1, which decreases the ubiquitination of EEF1A1 and stabilizes the protein level of EEF1A1 in muscle cells to promote atrophy.

We have identified circSnd1 as a novel circRNA that promotes muscle atrophy and highlighted its potential as a novel therapeutic target.

## Linked entities

- **Genes:** SND1 (staphylococcal nuclease and tudor domain containing 1) [NCBI Gene 27044], EIF4A3 (eukaryotic translation initiation factor 4A3) [NCBI Gene 9775], EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915], UBD (ubiquitin like modifier D) [NCBI Gene 10537]
- **Proteins:** EIF4A3 (eukaryotic translation initiation factor 4A3), EEF1A1 (eukaryotic translation elongation factor 1 alpha 1), UBD (ubiquitin like modifier D)
- **Species:** Mus musculus (taxon 10090), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** Ubd (ubiquitin D) [NCBI Gene 24108] {aka FAT10}, Trim63 (tripartite motif-containing 63) [NCBI Gene 433766] {aka MuRF1, RF1, Rnf28}, Fbxo32 (F-box protein 32) [NCBI Gene 67731] {aka 4833442G10Rik, ATROGIN1, Gm20361, MAFbx}, Nedd4l (neural precursor cell expressed, developmentally down-regulated gene 4-like) [NCBI Gene 83814] {aka 1300012C07Rik, NEDD4.2, Nedd4-2, Nedd4b}, EIF4EBP1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 1978] {aka 4E-BP1, 4EBP1, BP-1, PHAS-I}, EIF4A3 (eukaryotic translation initiation factor 4A3) [NCBI Gene 9775] {aka DDX48, Fal1, MUK34, NMP265, NUK34, RCPS}, Bax (BCL2-associated X protein) [NCBI Gene 12028], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Foxo3 (forkhead box O3) [NCBI Gene 56484] {aka 1110048B16Rik, 2010203A17Rik, FKHRL1, Fkhr2, Foxo3a}, Glb1 (galactosidase, beta 1) [NCBI Gene 12091] {aka Bge, Bgl, Bgl-e, Bgl-s, Bgl-t, Bgs}, SND1 (staphylococcal nuclease and tudor domain containing 1) [NCBI Gene 27044] {aka TDRD11, TSN, Tudor-SN, p100}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Mir16-1 (microRNA 16-1) [NCBI Gene 387134] {aka Mirn16, Mirn16-1, miR-16, mir-16-1}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Agt (angiotensinogen) [NCBI Gene 11606] {aka AngI, AngII, Aogen, Serpina8}, Fus (fused in sarcoma) [NCBI Gene 233908] {aka D430004D17Rik, D930039C12Rik, Fus1, Tls}, Snd1 (staphylococcal nuclease and tudor domain containing 1) [NCBI Gene 56463] {aka Tudor-SN}, EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915] {aka CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu}, Nup62 (nucleoporin 62) [NCBI Gene 18226] {aka D7Ertd649e, Nupc1, p62}, Hnrnpl (heterogeneous nuclear ribonucleoprotein L) [NCBI Gene 15388] {aka D830027H13Rik, Hnrpl}, Adar (adenosine deaminase, RNA-specific) [NCBI Gene 56417] {aka Adar1, Adar1p110, Adar1p150, DRADA, mZaADAR}, Cdkn2a (cyclin dependent kinase inhibitor 2A) [NCBI Gene 12578] {aka ARF-INK4a, Arf, INK4a-ARF, Ink4a/Arf, MTS1, Pctr1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Re (rex) [NCBI Gene 109540] {aka Den, Ri, denuded, riccioli}, Bcl2 (B cell leukemia/lymphoma 2) [NCBI Gene 12043] {aka Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik}, Ybx1 (Y box protein 1) [NCBI Gene 22608] {aka 1700102N10Rik, EF1A, MSY1, Nsep1, YB-1, dbpB}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Eif4a3 (eukaryotic translation initiation factor 4A3) [NCBI Gene 192170] {aka 2400003O03Rik, Ddx48, eIF4A-III, mKIAA0111}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, FOXO3 (forkhead box O3) [NCBI Gene 2309] {aka AF6q21, FKHRL1, FKHRL1P2, FOXO2, FOXO3A}, Mbl2 (mannose-binding lectin (protein C) 2) [NCBI Gene 17195] {aka L-MBP, MBL, MBL-C, MBP-C, RARF/P28A}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Tceal1 (transcription elongation factor A (SII)-like 1) [NCBI Gene 237052] {aka 0610011M09Rik, P21, SIIR, pp21}, Eef1a1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 13627], Cdk2 (cyclin dependent kinase 2) [NCBI Gene 12566] {aka A630093N05Rik}, Hmbs (hydroxymethylbilane synthase) [NCBI Gene 15288] {aka PBGD, Ups, Uros1}, Qki (quaking, KH domain containing RNA binding) [NCBI Gene 19317] {aka 1110003F05Rik, 1500005P18, Qk, l(17)-1Wis, l17Wis1}, Atp5f1b (ATP synthase F1 subunit beta) [NCBI Gene 11947] {aka Atp5b}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, alp (alopecia, recessive) [NCBI Gene 11691], Eef1a2 (eukaryotic translation elongation factor 1 alpha 2) [NCBI Gene 13628] {aka EEF1AL, EF-1-alpha-2, Eef1a, S1, STN, wasted}
- **Diseases:** cancer (MESH:D009369), Muscle Atrophy (MESH:D009133), loss of muscle strength (MESH:D009135), atrophy (MESH:D001284), reduction of muscle mass (MESH:C536030), renal failure (MESH:D051437), sarcopenia (MESH:D055948), neurological disorders (MESH:D009461), Muscle (MESH:D019042), chronic obstructive pulmonary disease (MESH:D029424), heart failure (MESH:D006333), cardiovascular diseases (MESH:D002318), Muscle tetanic contraction (MESH:C536214)
- **Chemicals:** SA-beta-gal (-), Dex (MESH:D003907), MG-132 (MESH:C072553), DAPI (MESH:C007293), PBS (MESH:D007854), H2O2 (MESH:D006861), CHX (MESH:D003513), Acetate (MESH:D000085), reactive oxygen species (MESH:D017382)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** AAV8 — Homo sapiens (Human), Transformed cell line (CVCL_6871), S24 — Mus musculus (Mouse), Hybridoma (CVCL_B5AU), S23 — Mus musculus (Mouse), Hybridoma (CVCL_N330), C2C12 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0188), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12855621/full.md

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Source: https://tomesphere.com/paper/PMC12855621