# The Role of Genetics in Congenital Heart Disease-Associated Pulmonary Arterial Hypertension

**Authors:** Fatma Hayvaci Canbeyli, Kazim Secgen, Fatih Suheyl Ezgu, Gulten Tacoy, Serkan Unlu, Hidayet Ozan Arabacı, Ayhan Pektas, Aslı Inci, Ergun Barıs Kaya, Umit Yasar Sinan, Mehmet Serdar Kucukoglu, Serdar Kula

PMC · DOI: 10.1007/s00246-025-03847-z · 2025-04-04

## TL;DR

This study explores how genetic variants contribute to pulmonary arterial hypertension in patients with congenital heart disease.

## Contribution

The study identifies 12 novel genetic variants that may help explain the genetic basis of APAH-CHD.

## Key findings

- 21 distinct variants across 11 genes were detected in 17 out of 42 APAH-CHD patients.
- The most common congenital heart defect in patients with detected variants was ventricular septal defect (VSD).
- Genetic variants were found in both children and adults with APAH-CHD.

## Abstract

Pulmonary arterial hypertension associated with congenital heart disease (APAH-CHD) is a severely progressive condition with complex pathogenesis. The aim of this study was to evaluate the contribution of genetic variants to the development of PAH in patients with APAH-CHD. Fifteen children and twenty-seven adults diagnosed with APAH-CHD were enrolled. Targeted next-generation sequencing was performed on PAH-associated genes (ABCC8, ACVRL1, AQP1, ATP13A3, BMPR2, CAV1, GDF2, GGCX, EIF2AK4, ENG, KCNK3, KDR, KLK1, SMAD1, SMAD4, SMAD9, SOX17, TBX4, TET2). A total of 21 distinct variants across 11 different genes were detected in 17 of the 42 patients. (ABCC8 = 2, ACVRL1 = 1, ATP13A3 = 2, BMPR2 = 4, GGCX = 1, EIF2AK4 = 2, ENG = 1, KDR = 3, SMAD1 = 1, SMAD9 = 1, TET2 = 3). Five of the patients with the mutation were under the age of 18, and 12 patients were adults. The most common CHD in patients with detected variants was VSD. PAH-related genetic variants were not uncommon in APAH-CHD patients. Our study identified 12 novel variants that may help to understand the genetic basis of APAH-CHD. Trial Registration The study has been registered on ClinicalTrials.gov with the identification number NCT05550389.

The online version contains supplementary material available at 10.1007/s00246-025-03847-z.

## Linked entities

- **Genes:** ABCC8 (ATP binding cassette subfamily C member 8) [NCBI Gene 6833], ACVRL1 (activin A receptor like type 1) [NCBI Gene 94], AQP1 (aquaporin 1 (Colton blood group)) [NCBI Gene 358], ATP13A3 (ATPase 13A3) [NCBI Gene 79572], BMPR2 (bone morphogenetic protein receptor type 2) [NCBI Gene 659], CAV1 (caveolin 1) [NCBI Gene 857], GDF2 (growth differentiation factor 2) [NCBI Gene 2658], GGCX (gamma-glutamyl carboxylase) [NCBI Gene 2677], EIF2AK4 (eukaryotic translation initiation factor 2 alpha kinase 4) [NCBI Gene 440275], ENG (endoglin) [NCBI Gene 2022], KCNK3 (potassium two pore domain channel subfamily K member 3) [NCBI Gene 3777], KDR (kinase insert domain receptor) [NCBI Gene 3791], KLK1 (kallikrein 1) [NCBI Gene 3816], SMAD1 (SMAD family member 1) [NCBI Gene 4086], SMAD4 (SMAD family member 4) [NCBI Gene 4089], SMAD9 (SMAD family member 9) [NCBI Gene 4093], SOX17 (SRY-box transcription factor 17) [NCBI Gene 64321], TBX4 (T-box transcription factor 4) [NCBI Gene 9496], TET2 (tet methylcytosine dioxygenase 2) [NCBI Gene 54790]
- **Diseases:** congenital heart disease (MONDO:0005453), pulmonary arterial hypertension (MONDO:0015924)

## Full-text entities

- **Genes:** SMAD9 (SMAD family member 9) [NCBI Gene 4093] {aka MADH6, MADH9, PPH2, SMAD8, SMAD8/9, SMAD8A}, PAH (phenylalanine hydroxylase) [NCBI Gene 5053] {aka PH, PKU, PKU1}, SMAD4 (SMAD family member 4) [NCBI Gene 4089] {aka DPC4, JIP, MADH4, MYHRS}, CAV1 (caveolin 1) [NCBI Gene 857] {aka BSCL3, CGL3, LCCNS, MSTP085, PPH3, VIP21}, ABCC8 (ATP binding cassette subfamily C member 8) [NCBI Gene 6833] {aka ABC36, HHF1, HI, HRINS, MODY12, MRP8}, GGCX (gamma-glutamyl carboxylase) [NCBI Gene 2677] {aka VKCFD1, VKGC}, ACVRL1 (activin A receptor like type 1) [NCBI Gene 94] {aka ACVRLK1, ALK-1, ALK1, HHT, HHT2, ORW2}, BMPR2 (bone morphogenetic protein receptor type 2) [NCBI Gene 659] {aka BMPR-II, BMPR3, BMR2, BRK-3, POVD1, PPH1}, SOX17 (SRY-box transcription factor 17) [NCBI Gene 64321] {aka PPH7, VUR3}, TET2 (tet methylcytosine dioxygenase 2) [NCBI Gene 54790] {aka IMD75, KIAA1546, MDS}, KCNK3 (potassium two pore domain channel subfamily K member 3) [NCBI Gene 3777] {aka DDSA, K2p3.1, OAT1, PPH4, TASK, TASK-1}, SMAD1 (SMAD family member 1) [NCBI Gene 4086] {aka BSP-1, BSP1, JV4-1, JV41, MADH1, MADR1}, GDF2 (growth differentiation factor 2) [NCBI Gene 2658] {aka BMP-9, BMP9, HHT5}, KLK1 (kallikrein 1) [NCBI Gene 3816] {aka KLKR, Klk6, hK1}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, EIF2AK4 (eukaryotic translation initiation factor 2 alpha kinase 4) [NCBI Gene 440275] {aka GCN2, PVOD2}, ENG (endoglin) [NCBI Gene 2022] {aka END, HHT1, ORW1}, ATP13A3 (ATPase 13A3) [NCBI Gene 79572] {aka AFURS1, PPH5}, AQP1 (aquaporin 1 (Colton blood group)) [NCBI Gene 358] {aka AQP-CHIP, CHIP28, CO}, TBX4 (T-box transcription factor 4) [NCBI Gene 9496] {aka ICPPS, PAPPAS, SPS}
- **Diseases:** VSD (MESH:D004310), Congenital Heart Disease (MESH:D006330), APAH-CHD (MESH:D000081029)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12855241/full.md

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Source: https://tomesphere.com/paper/PMC12855241