# A nanobody-stem cell platform targeting innate and adaptive immune axis in the tumour microenvironment

**Authors:** Ioulia Vogiatzi, Amelia Lehmann, Chuang Liu, Lucia Moreno-Lama, Yoshinori Kajiwara, Nobuhiko Kanaya, Olivier Zwaenepoel, Ali Salehi Farid, Uk-Jae Lee, Filippo Rossignoli, Mohammad Rashidian, Hiroaki Wakimoto, Jan Gettemans, Khalid Shah

PMC · DOI: 10.1016/j.ebiom.2026.106122 · 2026-01-17

## TL;DR

A new cell-based platform using nanobodies and stem cells targets immune suppression in tumors, potentially improving cancer immunotherapy.

## Contribution

A novel cell-based platform using nanobodies and stem cells to target both innate and adaptive immune suppression in the tumor microenvironment.

## Key findings

- Biparatopic nanobodies against CSF-1R and PD-1 showed superior efficacy in reprogramming tumor-associated macrophages and T cells.
- Stem cells releasing these nanobodies reduced tumor growth and enhanced immune activation in mouse models.
- The platform demonstrated therapeutic efficacy in a glioblastoma model post-surgery.

## Abstract

Tumour associated macrophages (TAMs) and exhausted T cells are dominant in the immuno-suppressive tumour microenvironment (TME) and pose a challenge to effective cancer immunotherapy in solid tumours.

In this study, we immunised llamas and generated monovalent and biparatopic nanobodies (Nbs) against colony stimulating factor 1 receptor (CSF-1R) and programmed death receptor 1 (PD-1) to re-educate TAMs and overcome T cell exhaustion, respectively, in the TME. To circumvent short systemic half-life and low peak concentrations of Nbs in the TME, we developed a platform of allogenic off-the-shelf stem cells (SC) releasing biparatopic PD-1 and CSF-1R Nbs and tested its efficacy in different mouse models.

Nbs targeting CSF-1R and PD-1 inhibited the CSF1/CSF-1R and PD-1/PD-L1 pathways, respectively, with biparatopic Nbs demonstrating superior efficacy and functionality compared with their monovalent counterparts. Locoregional SC mediated release of biparatopic CSF-1R and PD-1 Nbs, reduced tumour growth by increasing T cell numbers, enhancing T cell activation, and by shifting the macrophage polarisation towards a pro-inflammatory phenotype. Moreover, the presence of both Nbs improved dendritic cells (DCs) activation within the TME. Finally, we show that biocompatible gel encapsulated SC releasing Nbs against PD-1 and CSF-1R have therapeutic efficacy in a highly immunosuppressive glioblastoma model post-tumour resection.

Taken together, our findings establish a cell-based Nb platform targeting both innate and adaptive immune axis within the TME, which has the potential to facilitate treatment of solid cancers that are otherwise refractory to conventional immunotherapies.

This study was mainly supported by Institutional Funds (K.S). A part of in vivo Nb characterisation was supported by 10.13039/100000002NIH grant R01-CA285519 (K.S.) and the Nb dye conjugation and modelling was supported by 10.13039/100000002NIH grant R01-AI165666 (M.R).

## Linked entities

- **Genes:** CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 1436], PDCD1 (programmed cell death 1) [NCBI Gene 5133]
- **Proteins:** CSF1R (colony stimulating factor 1 receptor), PDCD1 (programmed cell death 1), CD274 (CD274 molecule), CSF1 (colony stimulating factor 1)
- **Diseases:** glioblastoma (MONDO:0018177)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, Ctla4 (cytotoxic T-lymphocyte-associated protein 4) [NCBI Gene 12477] {aka Cd152, Ctla-4, Ly-56}, Xcr1 (chemokine (C motif) receptor 1) [NCBI Gene 23832] {aka Ccxcr1, Gpr5, mXcr1}, Smo (smoothened, frizzled class receptor) [NCBI Gene 319757] {aka E130215L21Rik, Smoh, bnb, smoothened}, CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 1436] {aka BANDDOS, C-FMS, CD115, CSF-1R, CSFR, FIM2}, Cd47 (CD47 antigen (Rh-related antigen, integrin-associated signal transducer)) [NCBI Gene 16423] {aka 9130415E20Rik, B430305P08Rik, IAP, Itgp}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, LOC100513601 (patr class I histocompatibility antigen, A-126 alpha chain-like) [NCBI Gene 100513601] {aka PA1, PD1, SLA-1, SLA-1a, SLA-1b, SLA-P1}, Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Ybx1 (Y box protein 1) [NCBI Gene 22608] {aka 1700102N10Rik, EF1A, MSY1, Nsep1, YB-1, dbpB}, Lag3 (lymphocyte-activation gene 3) [NCBI Gene 16768] {aka CD223, LAG-3, Ly66}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, Havcr2 (hepatitis A virus cellular receptor 2) [NCBI Gene 171285] {aka TIM-3, Tim3, Timd3}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}, Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, Cd163 (CD163 antigen) [NCBI Gene 93671] {aka CD163v2, CD163v3}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, Csf1r (colony stimulating factor 1 receptor) [NCBI Gene 12978] {aka CD115, CSF-1R, Csfmr, Fim-2, Fim2, Fms}, Vcl (vinculin) [NCBI Gene 22330] {aka 9430097D22}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, Numb (NUMB endocytic adaptor protein) [NCBI Gene 18222] {aka Nb}, Cd247 (CD247 antigen) [NCBI Gene 12503] {aka 4930549J05Rik, A430104F18Rik, Cd3, Cd3-eta, Cd3-zeta, Cd3h}, Flt3l (FMS-like tyrosine kinase 3 ligand) [NCBI Gene 14256] {aka Flt3lg, Ly72L}, CSF1 (colony stimulating factor 1) [NCBI Gene 100513084] {aka MCSFBETA}, Sirpa (signal-regulatory protein alpha) [NCBI Gene 19261] {aka Bit, CD172a, Idd13.2, P84, Ptpns1, SHP-1}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, H2 (histocompatibility-2, MHC) [NCBI Gene 111364] {aka H-2, MHC-II}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 100517086]
- **Diseases:** metastasis (MESH:D009362), colorectal cancer (MESH:D015179), BMDM (MESH:D001855), inflammatory (MESH:D007249), lung adenocarcinoma (MESH:D000077192), metastatic (MESH:D000092182), solid (MESH:D018250), pancreatic cancer (MESH:D010190), SKCM (MESH:C562393), brain tumours (MESH:D001932), GBM (MESH:D005909), UV2 tumour (MESH:D009369), melanoma (MESH:D008545), lung cancer (MESH:D008175), toxicities (MESH:D064420)
- **Chemicals:** TES (MESH:C004551), penicillin (MESH:D010406), EDTA (MESH:D004492), streptomycin (MESH:D013307), Eosin (MESH:D004801), temozolomide (MESH:D000077204), sucrose (MESH:D013395), CO2 (MESH:D002245), PBS (MESH:D007854), Ipilimumab (MESH:D000074324), Haematoxylin (MESH:D006416), His (MESH:D006639), imidazole (MESH:C029899), ampicillin (MESH:D000667), SDS (MESH:D012967), IPTG (MESH:D007544), GlutaMAX (MESH:C054122), glucose (MESH:D005947), agarose (MESH:D012685), l-Glutamine (MESH:D005973), NEAA (-), acrylamide (MESH:D020106), S (MESH:D013455), AF647 (MESH:C569686), P (MESH:D010758)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Lama glama (llama, species) [taxon 9844], Homo sapiens (human, species) [taxon 9606], Mycoplasma (genus) [taxon 2093]
- **Cell lines:** SKCM — Canis lupus familiaris (Dog), Canine mastocytoma, Cancer cell line (CVCL_WH42), TC1 — Mus musculus (Mouse), Hybridoma (CVCL_G561), UV2 — Cricetulus griseus (Chinese hamster), Transformed cell line (CVCL_CX60), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), 293 T — Homo sapiens (Human), Transformed cell line (CVCL_0063), CT2A — Mus musculus (Mouse), Mouse glioblastoma, Cancer cell line (CVCL_ZJ44), WK6 — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_A665)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12853783/full.md

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Source: https://tomesphere.com/paper/PMC12853783