# Cross-domain neural collaborative filtering for personalized herbal prescription recommendation

**Authors:** Xin Dong, Wansong Zhang, Kuo Yang, Lei Zhang, Runshun Zhang, Juxian Tang, Xinyu Wang, Rouye Huang, Dejiang Ji, Gaxi Ye, Xuezhong Zhou

PMC · DOI: 10.1186/s13020-025-01294-9 · 2026-01-28

## TL;DR

This paper introduces a new method for recommending personalized herbal prescriptions using cross-domain neural collaborative filtering, improving recommendation accuracy and clinical relevance.

## Contribution

A novel cross-domain neural collaborative filtering framework called PresRecCDL is proposed for herbal prescription recommendation.

## Key findings

- PresRecCDL outperforms state-of-the-art models in herbal prescription recommendation.
- Ablation studies confirm the effectiveness and robustness of PresRecCDL's components.
- Network pharmacology case studies validate the model's scientific feasibility at the molecular level.

## Abstract

Herbal prescriptions hold significant importance in Traditional Chinese Medicine (TCM) diagnosis and treatment, embodying millennia of clinical case summaries and wisdom. Despite numerous proposed methods for herbal prescription recommendation (HPR), significant challenges persist due to the lack of comprehensive clinical data, particularly regarding the relationships between symptoms and herbs. This scarcity poses considerable hurdles for effective HPR modeling.

In this study, we introduced a novel herbal prescription recommendation framework with cross-domain neural collaborative filtering (termed PresRecCDL). The cross-domain learning mechanism is introduced to learn the noise-reduced cross-domain features of herbs and symptoms in the unified space, which alleviated the sparsity of data, and the neural collaborative filtering is utilized to carry out prescription recommendations.

Comprehensive experiments demonstrate the superiority of the proposed PresRecCDL model over the SOTA model. The effectiveness of each module in PresRecCDL and model robustness are validated by the ablation and hyper-parameter tuning experiments, respectively. The case study based on network pharmacology further validates the effectiveness of the proposed approach, particularly its scientific rigor and feasibility at the molecular mechanism level.

This study contributes to enhancing the performance of the HPR model, ultimately benefiting the efficiency and precision of clinical treatment.

## Full-text entities

- **Genes:** RENBP (renin binding protein) [NCBI Gene 5973] {aka RBP, RNBP}, AGER (advanced glycosylation end-product specific receptor) [NCBI Gene 177] {aka RAGE, SCARJ1, sRAGE}, SGPL1 (sphingosine-1-phosphate lyase 1) [NCBI Gene 8879] {aka NPHS14, RENI, S1PL, SPL}, ASPSCR1 (ASPSCR1 tether for SLC2A4, UBX domain containing) [NCBI Gene 79058] {aka ASPCR1, ASPL, ASPS, RCC17, TUG, UBXD9}
- **Diseases:** fatigue (MESH:D005221), Hepatitis B (MESH:D006509), Infectious Diseases (MESH:D003141), cancer (MESH:D009369), asthma (MESH:D001249), Symptom (MESH:D012816), oppression in chest (MESH:D013898), difficulty breathing (MESH:D004417), poor appetite (MESH:D001068), stomach and spleen disease (MESH:D013272), CPM (MESH:C538399), Sleep deprivation (MESH:D012892), fever (MESH:D005334), palpitation (MESH:D006331), Lung (MESH:D008171), SSD (MESH:C563928), HCM (MESH:C537866), dizziness (MESH:D004244), acid regurgitation (MESH:D008944), cough (MESH:D003371), diabetic complications (MESH:D048909)
- **Chemicals:** Dropout (-)
- **Species:** Cassia (genus) [taxon 53851], Crataegus (hawthorn, genus) [taxon 23159], Morinda (genus) [taxon 43521], Dendrobium (genus) [taxon 37818], Citrus maxima (buntan, species) [taxon 37334], Panax ginseng (Asiatic ginseng, species) [taxon 4054], Terminalia (genus) [taxon 39992], Lotus (genus) [taxon 3867], Pinellia (genus) [taxon 199219], Homo sapiens (human, species) [taxon 9606], Arum (genus) [taxon 4457], Melia azedarach (chinaberry, species) [taxon 155640]

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12853632/full.md

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Source: https://tomesphere.com/paper/PMC12853632