# Systemic and airway T cell dynamics with influenza-specific immune recovery by cystic fibrosis elexacaftor/tezacaftor/ivacaftor therapy

**Authors:** Elli Mouchtaridi, Aleksandra Kowalik, Elisa J. M. Raineri, Marion Humbert, Josef Jägerstedt, Margaret Bojarlind, Kristina Nilsson, Malin Flodström-Tullberg, Terezia Pincikova, Johan K. Sandberg

PMC · DOI: 10.1186/s12931-026-03521-9 · Respiratory Research · 2026-01-22

## TL;DR

This study shows that ETI therapy in cystic fibrosis patients improves immune function in the lungs and blood, leading to better health outcomes.

## Contribution

The study reveals novel immunological effects of ETI therapy on T cell dynamics in both airways and systemic circulation in cystic fibrosis.

## Key findings

- ETI treatment increases T cell abundance in sputum and improves lung function.
- Peripheral blood shows expanded effector-memory CD8 and CD4 T cells during ETI.
- Influenza-specific T cell responses recover during ETI therapy.

## Abstract

Therapy with elexacaftor/tezacaftor/ivacaftor (ETI) works to improve the functionality of the cystic fibrosis (CF) transmembrane conductance regulator (CFTR) protein and has revolutionized CF treatment. However, the implications of ETI for airway barrier and systemic T cell immunobiology remain relatively little studied.

Here, we investigated the immunological effects of ETI at systemic and local pulmonary levels, using paired peripheral blood and sputum sampling, in relation to key clinical parameters. Samples were taken longitudinally at baseline (n = 27), and at three (n = 24) and 12 months (n = 19) of treatment and subjected to analysis by advanced flow cytometry, T cell assays, and plasma proteomics.

Before ETI treatment initiation, immune cell composition in the sputum closely reflected the plasma inflammatory proteome. T cell abundance in sputum correlated inversely with multiple plasma factors, including IL-17A, IL-8, HGF and TGFα, and with lower sweat chloride concentrations. Chronic microbial infection was associated with low abundance of CD4 T cells and mucosa-associated invariant T (MAIT) cells in sputum samples collected at baseline. During ETI treatment, T cells with lung resident characteristics including MAIT cells increased in sputum, accompanied by improved lung function and reduced systemic inflammation. In peripheral blood, the effector-memory CD8 and CD4 T cell pool expanded and the magnitude and quality of T cell responses to Influenza A virus recovered during ETI.

These findings indicate that ETI treatment promotes immunological remodelling in both airways and circulation, correlating with favorable changes in clinically relevant parameters, and a shift towards healthy immune regulation in the lung and improved adaptive T cell responses in circulation.

The online version contains supplementary material available at 10.1186/s12931-026-03521-9.

## Linked entities

- **Proteins:** CFTR (CF transmembrane conductance regulator), IL17A (interleukin 17A), CXCL8 (C-X-C motif chemokine ligand 8), HGF (hepatocyte growth factor), TGFA (transforming growth factor alpha)
- **Chemicals:** elexacaftor (PubChem CID 134587348), tezacaftor (PubChem CID 46199646), ivacaftor (PubChem CID 16220172)
- **Diseases:** cystic fibrosis (MONDO:0009061)

## Full-text entities

- **Genes:** NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, CD4 (CD4 molecule) [NCBI Gene 404704], IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 396814] {aka CD25, IL-2RA}, CXCL6 (C-X-C motif chemokine ligand 6) [NCBI Gene 6372] {aka CKA-3, GCP-2, GCP2, SCYB6}, CCL20 (C-C motif chemokine ligand 20) [NCBI Gene 6364] {aka CKb4, Exodus, LARC, MIP-3-alpha, MIP-3a, MIP3A}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, AXIN1 (axin 1) [NCBI Gene 8312] {aka AXIN, CMDOH, PPP1R49}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, MMP3 (matrix metallopeptidase 3) [NCBI Gene 396769] {aka MMP-3, MMP10}, MMP10 (matrix metallopeptidase 10) [NCBI Gene 4319] {aka SL-2, STMY2}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MMP1 (matrix metallopeptidase 1) [NCBI Gene 4312] {aka CLG}, TGFA (transforming growth factor alpha) [NCBI Gene 7039] {aka TFGA}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CD69 (CD69 molecule) [NCBI Gene 397165], CD27 (CD27 molecule) [NCBI Gene 100520023], CCR7 (C-C motif chemokine receptor 7) [NCBI Gene 1236] {aka BLR2, CC-CKR-7, CCR-7, CD197, CDw197, CMKBR7}, CXCL5 (C-X-C motif chemokine ligand 5) [NCBI Gene 6374] {aka ENA-78, SCYB5}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, IL6 (interleukin 6) [NCBI Gene 399500] {aka IL-6}, ENTPD1 (ectonucleoside triphosphate diphosphohydrolase 1) [NCBI Gene 397298] {aka ATP-DPH, CD39}, LAG3 (lymphocyte activating 3) [NCBI Gene 100125962] {aka CD223, LAG-3}, PDCD1 (programmed cell death 1) [NCBI Gene 100533201], CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, TNFRSF9 (TNF receptor superfamily member 9) [NCBI Gene 3604] {aka 4-1BB, CD137, CDw137, ILA, IMD109}, CFTR (CF transmembrane conductance regulator) [NCBI Gene 1080] {aka ABC35, ABCC7, CF, CFTR/MRP, MRP7, TNR-CFTR}, CCR6 (C-C motif chemokine receptor 6) [NCBI Gene 1235] {aka BN-1, C-C CKR-6, CC-CKR-6, CCR-6, CD196, CKR-L3}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, CD38 (CD38 molecule) [NCBI Gene 100511702], SULT1A1 (sulfotransferase family 1A member 1) [NCBI Gene 6817] {aka HAST1/HAST2, P-PST, P-PST 1, PST, ST1A1, ST1A3}, HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, CXCR5 (C-X-C motif chemokine receptor 5) [NCBI Gene 643] {aka BLR1, CD185, MDR15}
- **Diseases:** lung function decline (MESH:D055370), bacterial airway infections (MESH:D001424), systemic (MESH:D015619), allergic bronchopulmonary aspergillosis (MESH:D001229), airway infection (MESH:D007239), Chronic infection (MESH:D000088562), rash (MESH:D005076), autosomal recessive genetic condition (MESH:D030342), pancreatic insufficiency (MESH:D010188), respiratory insufficiency (MESH:D012131), Cancer (MESH:D009369), MAIT (MESH:D018442), Chronic Obstructive Pulmonary Disease (MESH:D029424), immune (MESH:D007154), respiratory syncytial virus (MESH:D018357), impaired lung function (MESH:D003072), headache (MESH:D006261), CF (MESH:D003550), influenza (MESH:D007251), lung infection (MESH:D012141), Viral infections (MESH:D014777), Inflammation (MESH:D007249), lung (MESH:D008171), P. aeruginosa infection (MESH:D011552), lymphadenopathy (MESH:D008206), acute and chronic airway infections (MESH:D054198), fungal (MESH:D009181)
- **Chemicals:** RU (MESH:D012428), formaldehyde (MESH:D005557), heparin (MESH:D006493), Lumacaftor (MESH:C569105), Cy7 (-), ivacaftor (MESH:C545203), L-Glutamine (MESH:D005973), sodium (MESH:D012964), T (MESH:D014316), OP (MESH:C572232), Elexacaftor (MESH:C000629074), gentamicin (MESH:D005839), EDTA (MESH:D004492), polystyrene (MESH:D011137), DMSO (MESH:D004121), HEPES (MESH:D006531), PBS (MESH:D007854), tezacaftor (MESH:C000625213), chloride (MESH:D002712), Sputolysin (MESH:D004229)
- **Species:** Mycobacterium lentiflavum (species) [taxon 141349], Mycobacterium avium (species) [taxon 1764], Aspergillus fumigatus (species) [taxon 746128], Influenza A virus (no rank) [taxon 11320], Staphylococcus aureus (species) [taxon 1280], H1N1 subtype (serotype) [taxon 114727], Mycobacteroides abscessus (species) [taxon 36809], Pseudomonas aeruginosa (species) [taxon 287], Homo sapiens (human, species) [taxon 9606], Stenotrophomonas maltophilia (species) [taxon 40324]
- **Mutations:** F508del CFTR

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12849456/full.md

## References

7 references — full list in the complete paper: https://tomesphere.com/paper/PMC12849456/full.md

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Source: https://tomesphere.com/paper/PMC12849456