# Peripheral lysosome levels dictate mTORC1 inactivation even when catabolically impaired

**Authors:** Huy Quang Dang, Therése Forssén, Spyridon Pantelios, Aisegkioul Nteli Chatzioglou, Ewa Kurzejamska, C. Theresa Vincent, Yasir Ibrahim, Anders P. Mutvei

PMC · DOI: 10.1186/s12964-026-02659-9 · Cell Communication and Signaling : CCS · 2026-01-20

## TL;DR

This study shows that peripheral lysosomes help maintain mTORC1 activity during nutrient scarcity, even when their catabolic functions are impaired.

## Contribution

The study reveals that peripheral lysosome levels, not autophagy, sustain mTORC1 signaling during starvation by modulating PI3K/Akt inputs.

## Key findings

- Peripheral lysosomes remain active during starvation and sustain mTORC1 signaling.
- Lysosome translocation to the perinuclear region is required for mTORC1 suppression.
- mTORC1 signaling persists even when lysosomal catabolism is blocked by chloroquine or concanamycin A.

## Abstract

The mechanistic target of rapamycin complex 1 (mTORC1) is a central driver of cell growth that is frequently hyperactivated in cancer. While mTORC1 is activated at the lysosomal surface in response to growth factors and amino acids, the processes governing its inactivation are not fully understood. Here, we report that sustained mTORC1 suppression during leucine or arginine starvation requires the translocation of peripheral lysosomes to the perinuclear region. Our data suggest that a pool of mTOR remains active at peripheral lysosomes during starvation, and that increased spatial separation between lysosomes and the plasma membrane attenuates PI3K/Akt signaling—thereby reducing inputs that otherwise maintain mTORC1 activity. Consequently, preventing lysosome translocation and increasing peripheral lysosome levels sustains mTORC1 signaling during prolonged starvation in a PI3K/Akt-dependent manner independently of autophagy. Under these conditions, mTORC1 signaling persists even when lysosomal catabolism is perturbed by chloroquine or concanamycin A. Collectively, these data indicate that the peripheral lysosome pool, even when catabolically impaired, can sustain mTORC1 signaling under nutrient scarcity, by modulating PI3K/Akt signaling input to the pathway. These observations identify peripheral lysosome levels as a critical determinant of mTORC1 inactivation during nutrient stress and may have implications for diseases with aberrant mTORC1 signaling, including cancer.

The online version contains supplementary material available at 10.1186/s12964-026-02659-9.

## Linked entities

- **Proteins:** Crtc (CREB-regulated transcription coactivator), PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha), AKT1 (AKT serine/threonine kinase 1)
- **Chemicals:** chloroquine (PubChem CID 2719), concanamycin A (PubChem CID 6438151)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** LAMP2 (lysosome associated membrane protein 2) [NCBI Gene 3920] {aka CD107b, DND, LAMP-2, LAMPB, LGP-96, LGP110}, ARL8B (ARF like GTPase 8B) [NCBI Gene 55207] {aka ARL10C, Gie1}, TSC2 (TSC complex subunit 2) [NCBI Gene 7249] {aka LAM, PPP1R160, TSC4}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, EIF2AK4 (eukaryotic translation initiation factor 2 alpha kinase 4) [NCBI Gene 440275] {aka GCN2, PVOD2}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, RPS6KB1 (ribosomal protein S6 kinase B1) [NCBI Gene 6198] {aka PS6K, S6K, S6K-beta-1, S6K1, STK14A, p70 S6KA}, TSC1 (TSC complex subunit 1) [NCBI Gene 7248] {aka LAM, TSC}, EIF4EBP1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 1978] {aka 4E-BP1, 4EBP1, BP-1, PHAS-I}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906] {aka C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, ATF4 (activating transcription factor 4) [NCBI Gene 468] {aka CREB-2, CREB2, TAXREB67, TXREB}, RAB7B (RAB7B, member RAS oncogene family) [NCBI Gene 338382] {aka RAB7}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, RHEB (Ras homolog, mTORC1 binding) [NCBI Gene 6009] {aka RHEB2}, RAP1B (RAP1B, member of RAS oncogene family) [NCBI Gene 5908] {aka K-REV, RAL1B, THC11}, MAP1LC3B (microtubule associated protein 1 light chain 3 beta) [NCBI Gene 81631] {aka ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a}
- **Diseases:** Cancer (MESH:D009369), lysosomal storage disorders (MESH:D016464), Tuberous sclerosis complex (MESH:D014402)
- **Chemicals:** PBS (MESH:D007854), Lipofectamine 2000 (MESH:C086724), GDC0941 (MESH:C532162), oil (MESH:D009821), water (MESH:D014867), G418 sulfate (MESH:C010680), Triton X-100 (MESH:D017830), Penicillin (MESH:D010406), Streptomycin (MESH:D013307), ConA (MESH:C036978), acid (MESH:D000143), arginine (MESH:D001120), PVDF (MESH:C024865), 5L-N (-), Phalloidin (MESH:D010590), GSK690693 (MESH:C528328), lipid (MESH:D008055), Poly-L-ornithine (MESH:C008973), CQ (MESH:D002738), formaldehyde (MESH:D005557), DAPI (MESH:C007293), leucine (MESH:D007930), AA (MESH:D000596)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** serine/threonine, S3G, 3C, leucine for 24, Q67L, T22N
- **Cell lines:** U2OS — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_0042), HEK293A — Homo sapiens (Human), Transformed cell line (CVCL_0045), Rab7T22N — Canis lupus familiaris (Dog), Spontaneously immortalized cell line (CVCL_A6WQ)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12849086/full.md

## References

3 references — full list in the complete paper: https://tomesphere.com/paper/PMC12849086/full.md

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Source: https://tomesphere.com/paper/PMC12849086