# Feed-forward loops by NR5A2 ensure robust gene activation during pre-implantation development

**Authors:** Wataru Kobayashi, Siwat Ruangroengkulrith, Eda Nur Arslantas, Adarsh Mohanan, Kikuë Tachibana

PMC · DOI: 10.1242/dev.205059 · Development (Cambridge, England) · 2026-01-08

## TL;DR

The study shows how the NR5A2 protein helps activate genes during early mouse development by working with other proteins in a loop-like system.

## Contribution

The study reveals a feed-forward regulatory mechanism involving NR5A2, KLF, and GATA factors during pre-implantation development.

## Key findings

- NR5A2 regulates Klf5 and Gata6, which in turn act as co-regulators of NR5A2.
- KLF5 contributes to H3K27ac deposition at genomic regions co-occupied by NR5A2.
- NR5A2 regulates Xist expression through co-binding with GATA factors.

## Abstract

Pioneer transcription factors are crucial for regulating zygotic genome activation and cell differentiation during mouse pre-implantation development. However, how pioneer factors function collectively to regulate early development remains poorly understood. Here, we determined the chromatin-binding profiles of the mouse pioneer factor NR5A2 during the totipotency-to-pluripotency transition and identified KLF and GATA family transcription factors as key co-regulators. NR5A2 regulates the expression of Klf5 and Gata6, the protein products of which in turn act as co-regulators of NR5A2 to promote development. Mechanistically, KLF5 contributes to H3K27ac deposition at genomic regions co-occupied by NR5A2. NR5A2 also regulates Xist expression, either directly or indirectly, through its role in co-binding with GATA factors and upregulating their expression. In vitro assays revealed that NR5A2 binds to nucleosomes with KLF5 and GATA6, suggesting that these pioneer factors can simultaneously bind to chromatin. Our findings provide evidence for a feed-forward regulatory mechanism by which NR5A2 activates expression of lineage-determining factors and these, together with NR5A2, subsequently co-bind nucleosomes to ensure robust gene activation during pre-implantation development.

Summary: The pioneer factor NR5A2 regulates KLF and GATA transcription factors and ensures robust gene activation during mouse pre-implantation development through feed-forward regulatory loops.

## Linked entities

- **Genes:** NR5A2 (nuclear receptor subfamily 5 group A member 2) [NCBI Gene 2494], KLF5 (KLF transcription factor 5) [NCBI Gene 688], GATA6 (GATA binding protein 6) [NCBI Gene 2627], XIST (X inactive specific transcript) [NCBI Gene 7503]
- **Proteins:** KLF5 (KLF transcription factor 5), GATA6 (GATA binding protein 6)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Klf5 (Kruppel-like transcription factor 5) [NCBI Gene 12224] {aka 4930520J07Rik, Bteb2, CKLF, IKLF}, Qrsl1 (glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1) [NCBI Gene 76563] {aka 2700038P16Rik, GatA}, Xist (inactive X specific transcripts) [NCBI Gene 213742] {aka A430022B11}, Nr5a2 (nuclear receptor subfamily 5, group A, member 2) [NCBI Gene 26424] {aka D1Ertd308e, Ftf, LRH-1, UF2-H3B, mFTF}, Gata6 (GATA binding protein 6) [NCBI Gene 14465] {aka GATA-6}
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12848575/full.md

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12848575/full.md

## References

72 references — full list in the complete paper: https://tomesphere.com/paper/PMC12848575/full.md

---
Source: https://tomesphere.com/paper/PMC12848575