# The cotranslational cycle of the ribosome-bound Hsp70 homolog Ssb

**Authors:** Ying Zhang, Lorenz Grundmann, Leonie Vollmar, Julia Schimpf, Volker Hübscher, Mohd Areeb, Irina Grishkovskaya, Anna Moddemann, Kerstin Werner, Thorsten Hugel, David Haselbach, Sabine Rospert

PMC · DOI: 10.1038/s41467-025-67685-6 · Nature Communications · 2026-01-16

## TL;DR

The paper reveals how the ribosome-bound Hsp70 homolog Ssb interacts with the ribosome and nascent chains during protein synthesis.

## Contribution

The study provides new structural and mechanistic insights into the cotranslational cycle of the ribosome-bound Ssb chaperone.

## Key findings

- Cryo-EM structures identify Rpl25/uL23 as the ribosomal binding site for Ssb.
- Ssb's substrate binding domain is positioned near the ribosome tunnel exit to receive nascent chains.
- Ssb undergoes conformational changes during ATP hydrolysis without clashing with the ribosome.

## Abstract

Coupling of ribosomal translation with cotranslational protein folding is essential for cellular homeostasis. In eukaryotes, Hsp70 and its J-domain cochaperone, the heterodimeric ribosome-associated complex (RAC), are central to this process; however, mechanistic insights into the coordination of Hsp70 function with translation remain limited. Here, we present two cryo-EM structures of the ribosome-bound yeast Hsp70 Ssb, identifying Rpl25/uL23 as the ribosomal binding site and revealing its interaction with a model nascent chain. Together with detailed biochemical and mutational analyses, these structures enable us to delineate the intricate RAC-dependent cycle, which positions the substrate binding domain of Ssb-ATP close to the tunnel exit to receive nascent chains. This arrangement allows Ssb to undergo substantial conformational changes upon ATP hydrolysis without steric clashes with the ribosome, while the substrate binding domain of Ssb, now anchored by the tightly bound nascent chain, remains close to the tunnel exit.

Ribosomal translation is coupled to cotranslational protein folding, process assisted by dedicated chaperones. Here, authors present structures of the ribosome-bound yeast Hsp70 chaperone Ssb, identifying its ribosomal binding site and revealing its interactions with a model nascent chain.

## Linked entities

- **Genes:** RPL25 (60S ribosomal protein uL23 RPL25) [NCBI Gene 853993], RPL23A (ribosomal protein L23a) [NCBI Gene 6147]
- **Proteins:** HSPA1A (heat shock protein family A (Hsp70) member 1A), SSB (small RNA binding exonuclease protection factor La), AKT1 (AKT serine/threonine kinase 1)

## Full-text entities

- **Genes:** SSB (small RNA binding exonuclease protection factor La) [NCBI Gene 6741] {aka LARP3, La, La/SSB, SSB/La}, HSPA14 (heat shock protein family A (Hsp70) member 14) [NCBI Gene 51182] {aka HSP70-4, HSP70L1}, DLGAP2 (DLG associated protein 2) [NCBI Gene 9228] {aka C8orf68, DAP2, ERICH1-AS1, SAPAP2}, DNAJC2 (DnaJ heat shock protein family (Hsp40) member C2) [NCBI Gene 27000] {aka MPHOSPH11, MPP11, ZRF1, ZUO1}, DAP2 (dipeptidyl aminopeptidase) [NCBI Gene 856423] {aka DPP2}, SPSB1 (splA/ryanodine receptor domain and SOCS box containing 1) [NCBI Gene 80176] {aka SSB-1, SSB1}, HSPA1A (heat shock protein family A (Hsp70) member 1A) [NCBI Gene 3303] {aka HEL-S-103, HSP70, HSP70-1, HSP70-1A, HSP70-2, HSP70.1}, SSB2 (Hsp70 family ATPase SSB2) [NCBI Gene 855512] {aka YG103}, RPL17A (60S ribosomal protein uL22 RPL17A) [NCBI Gene 853674] {aka RPL17}, SSZ1 (ribosome-associated complex protein SSZ1) [NCBI Gene 856461] {aka PDR13}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, RPL25 (60S ribosomal protein uL23 RPL25) [NCBI Gene 853993], HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308] {aka APG-2, HEL-S-5a, HS24/P52, HSPH2, RY, hsp70}, SSB1 (Hsp70 family ATPase SSB1) [NCBI Gene 851369] {aka YG101}, PGK1 (phosphoglycerate kinase) [NCBI Gene 850370], F2 (coagulation factor II, thrombin) [NCBI Gene 2147] {aka PT, RPRGL2, THPH1}
- **Chemicals:** paromomycin (MESH:D010303), Ni2+-NTA (MESH:C088321), KOH (MESH:C029943), glucose (MESH:D005947), agarose (MESH:D012685), salt (MESH:D012492), amino acid (MESH:D000596), imidazole (MESH:C029899), GTP (MESH:D006160), SDS (MESH:D012967), ADP (MESH:D000244), nitrogen (MESH:D009584), Heparin (MESH:D006493), His6 (MESH:C471213), PMSF (MESH:D010664), putrescine (MESH:D011700), Tricine (MESH:C100184), P (MESH:D010758), BS (MESH:D001895), CL (MESH:D002713), bis-(sulfosuccinimidyl)-suberate (MESH:C035760), methionine (MESH:D008715), KOAc (-), cysteine (MESH:D003545), E (MESH:D004540), creatine phosphate (MESH:D010725), ATP (MESH:D000255), nourseothricin (MESH:D013309), PVDF (MESH:C024865), copper (MESH:D003300), sucrose (MESH:D013395), carbon (MESH:D002244), pepstatin A. (MESH:C031375), IP (MESH:C041508), dimethyl sulfoxide (MESH:D004121), HEPES (MESH:D006531), ethane (MESH:D004980), cycloheximide (MESH:D003513), Nucleotide (MESH:D009711), KCl (MESH:D011189), AMPPNP (MESH:D000266), NaCl (MESH:D012965), geneticin (MESH:C010680), dithiothreitol (MESH:D004229), S.c (MESH:D012538)
- **Species:** Cohnella sp. T (species) [taxon 365345], Olea europaea (common olive, species) [taxon 4146], Mus musculus (house mouse, species) [taxon 10090], S.c. [taxon 544725], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli (E. coli, species) [taxon 562], Thermochaetoides thermophila (species) [taxon 209285], Powellomyces sp. EA (species) [taxon 252690], Homo sapiens (human, species) [taxon 9606], Escherichia coli BL21(DE3) (strain) [taxon 469008]
- **Mutations:** K603, E77, C454S, R596, D134A, D131A, K603D, K597D, R604D, C435S, E77K, D131, D589C, D131K, C with 1, E370R, C20S, D134K, D134, T207A, R596D, R261D, R604, E77A, C3C, E547R, K597
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), pET28a — Oryctolagus cuniculus (Rabbit), Transformed cell line (CVCL_6E94)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12847954/full.md

## References

8 references — full list in the complete paper: https://tomesphere.com/paper/PMC12847954/full.md

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Source: https://tomesphere.com/paper/PMC12847954