# Rhodopsin molecular evolution from mouse to human phenylalanine 88 to leucine substitution enhances thermal stability and post-activation decay

**Authors:** Feifei Wang, Alexander V. Kolesnikov, Shinya Sato, Aneal Singh, Clint L. Makino, Pere Garriga, Vladimir J. Kefalov

PMC · DOI: 10.1038/s41598-025-32531-8 · Scientific Reports · 2026-01-26

## TL;DR

The study shows how a single amino acid change in rhodopsin improves its stability and function in human eyes compared to mouse eyes.

## Contribution

The novel contribution is demonstrating how the F88L substitution in rhodopsin enhances thermal stability and regeneration in diurnal species.

## Key findings

- The F88L mutation increases rhodopsin conformational stability and chromophore regeneration.
- Metarhodopsin II decay is faster in the F88L mutant compared to the wild-type.
- Despite molecular improvements, the F88L mutation does not significantly alter visual function in mice.

## Abstract

The function of rod photoreceptors as dim light photon detectors depends critically on the molecular properties of their visual pigment, rhodopsin. The structure of rhodopsin has evolved under selective pressure to light conditions of different spectral composition and overall intensity. One notable example is the switch of mammalian species from nocturnal to diurnal environments. Comparison of the rhodopsins of the nocturnal mouse and the diurnal human reveals high sequence similarity, with only 18 distinct amino acids. Here, we examined the role of one of these, mouse phenylalanine (F) vs. human leucine (L) at position 88, in modulating the molecular properties of rhodopsin and the function of rods by generating an F88L rhodopsin knock-in mouse. Our detailed in vitro analysis of the physicochemical properties of this mutant F88L rhodopsin showed a higher conformational stability and more efficient chromophore regeneration compared to the WT mouse pigment. We also found that the decay of metarhodopsin II in the F88L mutant occurred significantly faster than in the WT. However, despite these molecular changes, the visual function of knock-in mutant mice carrying the F88L mutation was not significantly altered by this amino acid change. These findings demonstrate the role of the F88L evolutionary switch in enhancing the stability and regeneration of rhodopsin towards visual function in diurnal human rods over nocturnal mouse rods. Our results provide new insights into the molecular evolution of rhodopsin in vertebrates.

The online version contains supplementary material available at 10.1038/s41598-025-32531-8.

## Linked entities

- **Proteins:** rhodopsin (rhodopsin-like)
- **Species:** Mus musculus (taxon 10090), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** Gpr34 (G protein-coupled receptor 34) [NCBI Gene 23890] {aka Lypsr1}, Rpe (ribulose-5-phosphate-3-epimerase) [NCBI Gene 66646] {aka 2810429B02Rik, 5730518J08Rik}, RHO (rhodopsin) [NCBI Gene 6010] {aka CSNBAD1, OPN2, RP4}, Rpe65 (retinal pigment epithelium 65) [NCBI Gene 19892] {aka 65kDa, A930029L06Rik, LCA2, Mord1, RP20, rd12}, Rho (rhodopsin) [NCBI Gene 212541] {aka Noerg1, Opn2, Ops, RP4}
- **Diseases:** II and III (MESH:C536044), RP (MESH:D012174), Blindness (MESH:D001766), retinal degenerative disease (MESH:D012164), II (MESH:C537730), night blindness (MESH:D009755), rod-cone dystrophy (MESH:D000071700), pupil dilation (MESH:D011681), hereditary diseases (MESH:D030342), Meta III (MESH:C537189)
- **Chemicals:** paraformaldehyde (MESH:C003043), lipid (MESH:D008055), PBS (MESH:D007854), L15 (-), phenylephrine (MESH:D010656), Schiff base (MESH:D012545), tropicamide (MESH:D014331), L-glutamate (MESH:D018698), CO2 (MESH:D002245), hydroxylamine (MESH:D019811), nitrogen (MESH:D009584), hematoxylin (MESH:D006416), NaHCO3 (MESH:D017693), EDTA (MESH:D004492), xylazine (MESH:D014991), DM (MESH:C040358), glutaraldehyde (MESH:D005976), DL-2-amino-4-phosphonobutyric acid (MESH:C012729), EPON (MESH:C004875), CaCl2 (MESH:D002122), aromatic amino acids (MESH:D024322), MgCl2 (MESH:D015636), Phe (MESH:D010649), glucose (MESH:D005947), HEPES (MESH:D006531), H2SO4 (MESH:C033158), Leu (MESH:D007930), Araldite (MESH:C005752), eosin (MESH:D004801), Lys (MESH:D008239), 11-cis-retinal (MESH:D012172), NaCl (MESH:D012965), KCl (MESH:D011189), atropine sulfate (MESH:D001285), Sepharose (MESH:D012685), H&amp;E (MESH:D006371), amino acids (MESH:D000596), BaCl2 (MESH:C024986), sodium phosphate (MESH:C018279)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Homo sapiens (human, species) [taxon 9606], Diretmus argenteus (silver spinyfin, species) [taxon 88682], Mus musculus (house mouse, species) [taxon 10090], Strigiformes (owls, order) [taxon 30458], Theria (clade) [taxon 32525]
- **Mutations:** leucine (L) at position 88, proline residue at position 189, Gly-90 to Asp or to Val, V81F, tryptophan at position 265, L84H, I307N, Y102H, Val-87 to Asp, Gly, phenylalanine 88 to leucine, Leu by a Pro

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12847716/full.md

## References

3 references — full list in the complete paper: https://tomesphere.com/paper/PMC12847716/full.md

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Source: https://tomesphere.com/paper/PMC12847716