# Molecular gatekeepers: eukaryotic translation factors decoding plant–virus dynamics for resistance engineering

**Authors:** Pankhuri Singhal, Shubham Saini, Oshin Saini, Ankit Bishnoi, Rashmi E.R., Bharat Raj Meena, Jitender Singh, Kalenahalli Yogendra

PMC · DOI: 10.1007/s44154-025-00273-2 · Stress Biology · 2026-01-27

## TL;DR

This paper reviews how plant viruses exploit translation factors to spread and suggests engineering these factors to improve plant resistance.

## Contribution

The paper introduces an eukaryotic translation factor-centered framework for breeding virus-resistant crops.

## Key findings

- Plant viruses rely on host eIFs and eEFs for replication and movement.
- Targeting eTFs can reduce susceptibility without harming plant functions.
- CRISPR and RNAi are proposed as tools for resistance engineering.

## Abstract

Plant viruses are among the most significant biotic stressors, posing a severe threat to crop productivity and global food security. Their success largely depends on the exploitation of host eukaryotic translation factors (eTFs), including initiation factors (eIFs) and elongation factors (eEFs), which act as molecular gatekeepers of the viral life cycle. Key members such as eIF4E, eIF(iso)4E, eIF4G, eEF1A, and eEF1B have been identified as susceptibility factors that mediate viral translation, replication, and systemic movement. Viruses have co-evolved specialized proteins and RNA elements, including VPg and IRES structures, to hijack these host factors and circumvent plant defense barriers. This review synthesizes current understanding of the mechanistic roles of eTFs in virus–host dynamics and highlights strategies to mitigate viral stress. Approaches such as natural allele mining, induced mutagenesis, TILLING/EcoTILLING, RNA interference, and precise genome editing with CRISPR/Cas systems are explored as practical tools for reducing susceptibility. Targeted manipulation of eTFs offers a promising avenue to reprogram plants for resistance while maintaining essential cellular functions. By integrating molecular biology with applied strategies, we propose an eTF-centered framework for resistance breeding within a broader stress biology perspective. Future research combining functional genomics, synthetic biology, and breeding innovation will be pivotal in delivering broad-spectrum, durable, and environmentally sustainable resistance to plant viral stress.

## Linked entities

- **Genes:** EIF4E (eukaryotic translation initiation factor 4E) [NCBI Gene 1977], eIF(iso)4E (eukaryotic translation initiation factor iso4E) [NCBI Gene 100134893], EIF4G1 (eukaryotic translation initiation factor 4 gamma 1) [NCBI Gene 1981], EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915], EEF1B2 (eukaryotic translation elongation factor 1 beta 2) [NCBI Gene 1933]
- **Proteins:** Vpg (-)

## Full-text entities

- **Genes:** EIF3I (eukaryotic translation initiation factor 3 subunit I) [NCBI Gene 8668] {aka EIF3S2, PRO2242, TRIP-1, TRIP1, eIF3-beta, eIF3-p36}, EIF2S3 (eukaryotic translation initiation factor 2 subunit gamma) [NCBI Gene 1968] {aka EIF2, EIF2G, EIF2gamma, MEHMO, MRXSBRK, eIF-2gA}, EEF2 (eukaryotic translation elongation factor 2) [NCBI Gene 1938] {aka EEF-2, EF-2, EF2, SCA26}, EEF1G (eukaryotic translation elongation factor 1 gamma) [NCBI Gene 1937] {aka EF1G, GIG35}, EIF4E (eukaryotic translation initiation factor 4E) [NCBI Gene 1977] {aka AUTS19, CBP, EIF4E1, EIF4EL1, EIF4F, eIF-4E}, RASGRF1 (Ras protein specific guanine nucleotide releasing factor 1) [NCBI Gene 5923] {aka CDC25, CDC25L, GNRP, GRF1, GRF55, H-GRF55}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, PABPC1 (poly(A) binding protein cytoplasmic 1) [NCBI Gene 26986] {aka PAB1, PABP, PABP1, PABPC2, PABPL1}, EEF1B2P2 (eukaryotic translation elongation factor 1 beta 2 pseudogene 2) [NCBI Gene 1934] {aka BETA-3, EEF-1, EEF-1BETA5A, EEF1B, EEF1B3}, EIF5 (eukaryotic translation initiation factor 5) [NCBI Gene 1983] {aka EIF-5, EIF-5A}, CP (ceruloplasmin) [NCBI Gene 1356] {aka AB073614, CP-2}, EIF3B (eukaryotic translation initiation factor 3 subunit B) [NCBI Gene 8662] {aka EIF3-ETA, EIF3-P110, EIF3-P116, EIF3S9, PRT1}, ARHGEF2 (Rho/Rac guanine nucleotide exchange factor 2) [NCBI Gene 9181] {aka GEF, GEF-H1, GEFH1, LFP40, Lfc, NEDMHM}, EIF2B2 (eukaryotic translation initiation factor 2B subunit beta) [NCBI Gene 8892] {aka EIF-2Bbeta, EIF2B, EIF2Bbeta, VWM2}, HCAR3 (hydroxycarboxylic acid receptor 3) [NCBI Gene 8843] {aka GPR109B, HCA3, HM74, PUMAG, Puma-g}, EIF5B (eukaryotic translation initiation factor 5B) [NCBI Gene 9669] {aka IF2}, EIF2AK4 (eukaryotic translation initiation factor 2 alpha kinase 4) [NCBI Gene 440275] {aka GCN2, PVOD2}, GOLPH3 (golgi phosphoprotein 3) [NCBI Gene 64083] {aka GOPP1, GPP34, MIDAS, Vps74}, EIF5A (eukaryotic translation initiation factor 5A) [NCBI Gene 1984] {aka EIF-5A, EIF5A1, FABAS, eIF-4D, eIF5AI}, NCBP1 (nuclear cap binding protein subunit 1) [NCBI Gene 4686] {aka CBP80, NCBP, Sto1}, NALF2 (NALCN channel auxiliary factor 2) [NCBI Gene 27112] {aka CXorf63, FAM155B, TED, TMEM28, bB57D9.1}, EIF4A2 (eukaryotic translation initiation factor 4A2) [NCBI Gene 1974] {aka BM-010, DDX2B, EIF4A, EIF4F, NEDHSS, eIF-4A-II}, ING1 (inhibitor of growth family member 1) [NCBI Gene 3621] {aka p24ING1c, p33, p33ING1, p33ING1b, p47, p47ING1a}, MTG1 (mitochondrial ribosome associated GTPase 1) [NCBI Gene 92170] {aka GTP, GTPBP7}, POT1 (protection of telomeres 1) [NCBI Gene 25913] {aka CMM10, CRMCC3, GLM9, HPOT1, PFBMFT8, TPDS3}, EIF1 (eukaryotic translation initiation factor 1) [NCBI Gene 10209] {aka A121, EIF-1, EIF1A, ISO1, SUI1}, RPL24 (ribosomal protein L24) [NCBI Gene 6152] {aka HEL-S-310, L24, eL24}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, EIF4B (eukaryotic translation initiation factor 4B) [NCBI Gene 1975] {aka EIF-4B, PRO1843}, EIF4G1 (eukaryotic translation initiation factor 4 gamma 1) [NCBI Gene 1981] {aka EIF-4G1, EIF4F, EIF4G, EIF4GI, P220, PARK18}, EIF4E (eukaryotic translation initiation factor 4E) [NCBI Gene 827529] {aka ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, AT.EIF4E1, CUCUMOVIRUS MULTIPLICATION 1, CUM1, EUKARYOTIC TRANSLATION INITATION FACTOR 4E, F15J5.10}, EIF4A1 (eukaryotic translation initiation factor 4A1) [NCBI Gene 1973] {aka DDX2A, EIF-4A, EIF4A, eIF-4A-I, eIF4A-I}, UQCRFS1 (ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1) [NCBI Gene 7386] {aka ISP, MC3DN10, RIP1, RIS1, RISP, UQCR5}, ABCE1 (ATP binding cassette subfamily E member 1) [NCBI Gene 6059] {aka ABC38, OABP, RLI, RLI1, RNASEL1, RNASELI}, EIF4E2 (eukaryotic translation initiation factor 4E family member 2) [NCBI Gene 9470] {aka 4E-LP, 4EHP, EIF4EL3, IF4e, h4EHP}, EIF3A (eukaryotic translation initiation factor 3 subunit A) [NCBI Gene 8661] {aka EIF3, EIF3S10, P167, TIF32, eIF3-p170, eIF3-theta}, LSP1 (Eukaryotic initiation factor 4E protein) [NCBI Gene 833534] {aka EIF(ISO)4E, EIF4E2, EUKARYOTIC INITIATION FACTOR  (ISO)4E, EUKARYOTIC INITIATION FACTOR (ISO)4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1}, EIF2S2 (eukaryotic translation initiation factor 2 subunit beta) [NCBI Gene 8894] {aka EIF2, EIF2B, EIF2beta, PPP1R67, eIF-2-beta}, EIF6 (eukaryotic translation initiation factor 6) [NCBI Gene 3692] {aka CAB, EIF3A, ITGB4BP, b(2)gcn, eIF-6, p27(BBP)}, EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915] {aka CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu}, EIF2A (eukaryotic translation initiation factor 2A) [NCBI Gene 83939] {aka CDA02, EIF-2A, MST089, MSTP004, MSTP089}, eIF4E [NCBI Gene 543653], EIF4H (eukaryotic translation initiation factor 4H) [NCBI Gene 7458] {aka WBSCR1, WSCR1, eIF-4H}
- **Diseases:** necrosis (MESH:D009336), CITEs (MESH:C579969), PVX (MESH:C538354), CMV (MESH:D014777), TLSs (MESH:D000072717), plant virus (MESH:D010939), infection (MESH:D007239), BaMMV (MESH:D001924)
- **Chemicals:** CVB (MESH:C034483), proline (MESH:D011392), GDP (MESH:D006153), aa-tRNA (MESH:D012346), poly(A) (MESH:D011061), ATP (MESH:D000255), CITE (-)
- **Species:** Brassica rapa (field mustard, species) [taxon 3711], Zucchini yellow mosaic virus (no rank) [taxon 12232], Powellomyces sp. EA (species) [taxon 252690], Homo sapiens (human, species) [taxon 9606], Solanum habrochaites (species) [taxon 62890], Tobacco mosaic virus (no rank) [taxon 12242], Plum pox virus (no rank) [taxon 12211], Nicotiana benthamiana (species) [taxon 4100], Potyvirus (genus) [taxon 12195], Prunus domestica (plum, species) [taxon 3758], Pelargonium leaf curl virus (no rank) [taxon 35280], Beet western yellows virus (no rank) [taxon 12042], Solanum tuberosum (potatoes, species) [taxon 4113], Symbiodinium sp. MV (species) [taxon 231000], Turnip yellow mosaic virus (no rank) [taxon 12154], Brome mosaic virus (no rank) [taxon 12302], Tombusvirus (genus) [taxon 12141], Pea seed-borne mosaic virus (no rank) [taxon 12208], Barley yellow mosaic virus (no rank) [taxon 12465], unidentified tobacco necrosis virus (species) [taxon 12054], Carnation Italian ringspot virus (no rank) [taxon 39443], Brassica juncea (brown mustard, species) [taxon 3707], Soybean mosaic virus (no rank) [taxon 12222], Potato virus Y (no rank) [taxon 12216], Melon necrotic spot virus (no rank) [taxon 11987], Trichoderma sp. AV (species) [taxon 1852203], Barley yellow dwarf virus (species) [taxon 12037], Cucurbit aphid-borne yellows virus (no rank) [taxon 91753], Tobacco etch virus (no rank) [taxon 12227], Prunus persica (peach, species) [taxon 3760], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Sugarcane mosaic virus (no rank) [taxon 12224], Satellite tobacco mosaic virus (no rank) [taxon 12881], Papaya ringspot virus (no rank) [taxon 12205], Lettuce mosaic virus (no rank) [taxon 12202], Capsicum (peppers, genus) [taxon 4071], Cauliflower mosaic virus (no rank) [taxon 10641], Wheat yellow mosaic virus (no rank) [taxon 75746], Turnip mosaic virus (no rank) [taxon 12230], Carmovirus (genus) [taxon 11985], Citrus leprosis virus C (no rank) [taxon 347219], Barley mild mosaic virus (no rank) [taxon 12466], Solanum lycopersicum (tomato, species) [taxon 4081], Watermelon mosaic virus (no rank) [taxon 146500], Turnip crinkle virus (no rank) [taxon 11988], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Pepper mottle virus (no rank) [taxon 12209], Orthonairovirus abuminaense (species) [taxon 2843618], TSWV [taxon 1933298], Tomato bushy stunt virus (no rank) [taxon 12145], Potato virus A (no rank) [taxon 12215], Panicum mosaic virus (no rank) [taxon 40279], Cucumber mosaic virus (cucumber mosaic cucumovirus, no rank) [taxon 12305], Rice yellow mottle virus (no rank) [taxon 31744], Pelargonium line pattern virus (no rank) [taxon 167019], Tomato yellow leaf curl virus (no rank) [taxon 10832], Alfamovirus AMV (species) [taxon 12321], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Triticum mosaic virus (no rank) [taxon 431317], Pea enation mosaic virus 2 (no rank) [taxon 193120]
- **Mutations:** Ito K, D71G, D55G, A120G, W95L, K150E
- **Cell lines:** MNSV — Leiostomus xanthurus (Spot), Spontaneously immortalized cell line (CVCL_S947)

## Full text

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## Figures

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## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12847506/full.md

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Source: https://tomesphere.com/paper/PMC12847506