# Translational MicroRNA research in COVID-19: bridging in Silico prediction with clinical biomarker potential

**Authors:** Fathia Z. El Sharkawi, Marwa A. Mohamed, Karim Montasser, Mamdouh M. Mahdi, Hanaa B. Atya

PMC · DOI: 10.1007/s10238-025-02028-9 · Clinical and Experimental Medicine · 2026-01-21

## TL;DR

This study explores the potential of specific microRNAs as biomarkers for diagnosing and understanding different aspects of COVID-19.

## Contribution

The study validates in silico predicted microRNAs in real-world clinical samples, highlighting their diagnostic potential despite conflicting predictions.

## Key findings

- Serum levels of miR-196a-5p, miR-98-5p, and miR-27a-3p were significantly elevated in COVID-19 patients compared to healthy controls.
- miR-196a-5p showed high sensitivity and specificity for diagnosing COVID-19.
- Inflammatory markers like IL-6 and HIF-1α were elevated in patients compared to controls.

## Abstract

COVID-19 continues to evolve. Thus, new therapeutic alternatives are needed. Some in silico analyses, including the role of microRNAs, have shown promising results, but they are based on computational simulations and predictions, so their consistency with real-world results may vary. This study investigated the potential of three miRNAs (miR-196a-5p, miR-98-5p, and miR-27a-3p) obtained from published bioinformatics results as promising biomarkers for different aspects of COVID-19 (susceptibility, severity, and therapeutic possibilities). The current study found that, serum levels of these miRNAs were significantly elevated in COVID-19 patients compared to healthy controls, particularly during the third wave patients which is contrast to that reported in In silico study regarding miR-98-5p. Additionally, serum levels of inflammatory markers such as interleukin − 6 (IL-6) and hypoxia inducible factor- 1 α (HIF-1α) were higher in patients compared to healthy control. miR-196a-5p exhibited high sensitivity and specificity for COVID-19 diagnosis. Finally, we highlight the necessity of validating microRNAs in patient serum, as our findings show that their differential expression is robust and independent of the initial predictive model. This study effectively translates a bioinformatics hypothesis into a verifiable biomarker through experimental validation regardless of the contradictory findings between hypothesis and the actual results.

## Linked entities

- **Proteins:** IL6 (interleukin 6), HIF1A (hypoxia inducible factor 1 subunit alpha)
- **Diseases:** COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** MIR4310 (microRNA 4310) [NCBI Gene 100423013], MIR98 (microRNA 98) [NCBI Gene 407054] {aka MIRLET7L, MIRN98, hsa-mir-98, miR-98}, MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, HIF1AN (hypoxia inducible factor 1 subunit alpha inhibitor) [NCBI Gene 55662] {aka FIH1}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, MIR27A (microRNA 27a) [NCBI Gene 407018] {aka MIR27, MIRN27A, mir-27a}, TMPRSS2 (transmembrane serine protease 2) [NCBI Gene 7113] {aka PRSS10}, MRC1 (mannose receptor C-type 1) [NCBI Gene 4360] {aka CD206, CLEC13D, CLEC13DL, MMR, MRC1L1, bA541I19.1}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, MIR4291 (microRNA 4291) [NCBI Gene 100422927], IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, ACE (angiotensin I converting enzyme) [NCBI Gene 1636] {aka ACE1, CD143, DCP, DCP1}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, MIR3611 (microRNA 3611) [NCBI Gene 100500890], IL7 (interleukin 7) [NCBI Gene 3574] {aka IL-7, IMD130}, ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}
- **Diseases:** fever (MESH:D005334), endothelial dysfunction (MESH:D014652), inflammation (MESH:D007249), metabolic disorders (MESH:D008659), lung inflammation (MESH:D011014), lung disease (MESH:D008171), COVID (MESH:D000086382), chronic (MESH:D002908), bacterial, fungal, viral, or other infections (MESH:D014777), diabetes (MESH:D003920), CRS (MESH:D000080424), immune dysfunction (MESH:D007154), hypoxia (MESH:D000860), respiratory illness (MESH:D012140), death (MESH:D003643), cardiovascular disease (MESH:D002318), cancer (MESH:D009369), acute respiratory failure (MESH:D012131), multiple system organ failure (MESH:D009102), hypoxic (MESH:D002534), lung cancer (MESH:D008175), IBD (MESH:D015212), IgA nephropathy (MESH:D005922), Infection (MESH:D007239), lymph node metastasis (MESH:D008207), autoimmune diseases (MESH:D001327), lung injury (MESH:D055370), NSCLC (MESH:D002289), systemic (MESH:D015619), squamous cell carcinoma (MESH:D002294), multiorgan failure (MESH:D051437), hepatitis C virus (HCV) infection (MESH:D006526)
- **Chemicals:** remdesivir (MESH:C000606551), water (MESH:D014867), Miravirsen (MESH:C581159), oxygen (MESH:D010100), ROS (MESH:D017382), Mito (-), lactate (MESH:D019344), iron (MESH:D007501), zinc (MESH:D015032), TRIzol (MESH:C411644)
- **Species:** Homo sapiens (human, species) [taxon 9606], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]
- **Cell lines:** Hu2192 — Homo sapiens (Human), Transformed cell line (CVCL_K952)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12847188/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12847188/full.md

## References

4 references — full list in the complete paper: https://tomesphere.com/paper/PMC12847188/full.md

---
Source: https://tomesphere.com/paper/PMC12847188