# A cytokine receptor–targeting chimera toolbox for expanding extracellular targeted protein degradation

**Authors:** Kaan Kumru, Zi Yao, Brandon B. Holmes, Fangzhu Zhao, Yun Zhang, Emilio Ferrara, Trenton M. Peters-Clarke, Kevin K. Leung, James A. Wells

PMC · DOI: 10.1073/pnas.2524129123 · Proceedings of the National Academy of Sciences of the United States of America · 2026-01-21

## TL;DR

Researchers expanded a toolbox for extracellular protein degradation using cytokine receptors to enable more specific and effective therapies.

## Contribution

The study expanded the kineTAC toolbox with 81 new chimeras targeting diverse cytokine receptors for cell-type-specific extracellular protein degradation.

## Key findings

- 55 out of 81 kineTACs expressed at suitable levels without optimization.
- Some kineTACs showed higher potency than the original CXCL12-based version against specific targets.
- kineTACs can enhance antibody drug conjugates by leveraging their internalizing capability.

## Abstract

The field of targeted protein degradation has been expanding rapidly into the extracellular space, providing several advantages over traditional inhibitors. Even with the emergence of new extracellular targeted protein degradation (eTPD) strategies seemingly every month, there is still a striking insufficiency in eTPD receptors that are expressed only in specific tissues. Here, we sought to address this problem by expanding our platform of cytokine receptor–targeting chimeras (kineTACs) to many other cytokine receptors, taking advantage of the natural tissue-restricted distribution of these receptors to achieve eTPD with therapeutic relevance, to deliver cytotoxic cargoes, and with cell type specificity. We anticipate that selective eTPD will greatly enhance therapeutic windows and reduce off-tissue adverse effects, allowing for an expansion of targetable antigens.

Extracellular targeted protein degradation (eTPD) is an important new modality for manipulating the extracellular proteome. However, most eTPD receptors are expressed broadly or are restricted to the liver, limiting specific degradation in other tissues. Cytokine receptor–targeting chimeras (kineTACs) are genetically encoded bispecifics for eTPD that fuse a natural ligand like CXCL12 to an antibody, directing soluble or membrane proteins for lysosomal degradation using the widely expressed chemokine receptor CXCR7 (K. Pance et al., Nat. Biotechnol.
41, 273–281 (2023)]. Here, we dramatically expand the kineTAC toolbox by constructing 81 different kineTACs based on an unbiased list of cytokines, chemokines, and growth factors. Remarkably, 55 of these expressed at suitable levels for analysis without any optimization. Many of these kineTACs bind receptors that have unique cell-type expression profiles, allowing for eTPD in specific cells and tissues, and some were more potent than the original CXCL12-based kineTAC against specific targets. We further show the internalizing capability of a kineTAC can enhance the performance of antibody drug conjugates. We believe these simple, genetically encoded tools will be useful for expanding the applications for optimized or cell type–selective eTPD.

## Linked entities

- **Proteins:** CXCL12 (C-X-C motif chemokine ligand 12), ACKR3 (atypical chemokine receptor 3)

## Full-text entities

- **Genes:** IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, IL21 (interleukin 21) [NCBI Gene 59067] {aka CVID11, IL-21, Za11}, CCL14 (C-C motif chemokine ligand 14) [NCBI Gene 6358] {aka CC-1, CC-3, CKB1, HCC-1, HCC-1(1-74), HCC-1/HCC-3}, CCL20 (C-C motif chemokine ligand 20) [NCBI Gene 6364] {aka CKb4, Exodus, LARC, MIP-3-alpha, MIP-3a, MIP3A}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, CD14 (CD14 molecule) [NCBI Gene 929], IL32 (interleukin 32) [NCBI Gene 9235] {aka IL-32alpha, IL-32beta, IL-32delta, IL-32gamma, NK4, TAIF}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, IL18R1 (interleukin 18 receptor 1) [NCBI Gene 8809] {aka CD218a, CDw218a, IL-18R, IL-18R-alpha, IL-18Ralpha, IL-1Rrp}, CCL8 (C-C motif chemokine ligand 8) [NCBI Gene 6355] {aka HC14, MCP-2, MCP2, SCYA10, SCYA8}, PPBP (pro-platelet basic protein) [NCBI Gene 5473] {aka B-TG1, Beta-TG, CTAP-III, CTAP3, CTAPIII, CXCL7}, CD63 (CD63 molecule) [NCBI Gene 967] {aka AD1, HOP-26, ME491, MLA1, OMA81H, Pltgp40}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, EPCAM (epithelial cell adhesion molecule) [NCBI Gene 4072] {aka Ber-Ep4, BerEp4, DIAR5, EGP-2, EGP314, EGP40}, IL7 (interleukin 7) [NCBI Gene 3574] {aka IL-7, IMD130}, CCL17 (C-C motif chemokine ligand 17) [NCBI Gene 6361] {aka A-152E5.3, ABCD-2, SCYA17, TARC}, FANCB (FA complementation group B) [NCBI Gene 2187] {aka FA2, FAAP90, FAAP95, FAB, FACB}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 395909] {aka VEGF}, IL36A (interleukin 36 alpha) [NCBI Gene 27179] {aka FIL1, FIL1(EPSILON), FIL1E, IL-1F6, IL1(EPSILON), IL1F6}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, CX3CL1 (C-X3-C motif chemokine ligand 1) [NCBI Gene 6376] {aka ABCD-3, C3Xkine, CXC3, CXC3C, NTN, NTT}, ACKR3 (atypical chemokine receptor 3) [NCBI Gene 57007] {aka CMKOR1, CXC-R7, CXCR-7, CXCR7, GPR159, RDC-1}, CXCR1 (C-X-C motif chemokine receptor 1) [NCBI Gene 3577] {aka C-C, C-C-CKR-1, CD128, CD181, CDw128a, CKR-1}, KRT20 (keratin 20) [NCBI Gene 54474] {aka CD20, CK-20, CK20, K20, KRT21}, CD5 (CD5 molecule) [NCBI Gene 921] {aka LEU1, T1}, APLP2 (amyloid beta precursor like protein 2) [NCBI Gene 334] {aka APLP-2, APPH, APPL2, CDEBP}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, IL4R (interleukin 4 receptor) [NCBI Gene 3566] {aka CD124, IL-4RA, IL4RA}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, IL36RN (interleukin 36 receptor antagonist) [NCBI Gene 26525] {aka FIL1, FIL1(DELTA), FIL1D, IL-36Ra, IL1F5, IL1HY1}, IL7R (interleukin 7 receptor) [NCBI Gene 3575] {aka CD127, CDW127, IL-7R-alpha, IL-7Ralpha, IL7RA, IL7Ralpha}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, AZIN2 (antizyme inhibitor 2) [NCBI Gene 113451] {aka ADC, AZIB1, ODC-p, ODC1L, ODCp}, CD33 (CD33 molecule) [NCBI Gene 945] {aka CD33rSiglec, SIGLEC-3, SIGLEC3, p67}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, IL1RN (interleukin 1 receptor antagonist) [NCBI Gene 3557] {aka CRMO2, DIRA, ICIL-1RA, IL-1RN, IL-1ra, IL-1ra3}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, IGHE (immunoglobulin heavy constant epsilon) [NCBI Gene 3497] {aka IgE}, TNFRSF8 (TNF receptor superfamily member 8) [NCBI Gene 943] {aka CD30, D1S166E, Ki-1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, LDLR (low density lipoprotein receptor) [NCBI Gene 3949] {aka LDLCQ2}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, CD47 (CD47 molecule) [NCBI Gene 961] {aka IAP, MER6, OA3}, CXCR2 (C-X-C motif chemokine receptor 2) [NCBI Gene 3579] {aka CD182, CDw128b, CMKAR2, IL8R2, IL8RA, IL8RB}, IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, IL17D (interleukin 17D) [NCBI Gene 53342] {aka IL-17D}, CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387] {aka IRH, PBSF, SCYB12, SDF1, TLSF, TPAR1}
- **Diseases:** toxicities (MESH:D064420), POI (MESH:D011488), cancer (MESH:D009369), pharynx squamous cell carcinoma (MESH:D002294), off (MESH:C531754), DLBCL (MESH:D016403), lymphoproliferative (MESH:D008232), eTPD (MESH:C535509), breast cancer (MESH:D001943), inflammatory (MESH:D007249)
- **Chemicals:** glycine (MESH:D005998), polystyrene divinylbenzene (MESH:C003771), Ni (MESH:D009532), OKT3 (MESH:D016853), Alexa Fluor 647 (MESH:C569686), Acetonitrile (MESH:C032159), TBS (MESH:D013725), N-hydroxy succinimide (MESH:C001426), FITC- SiHa (-), ACN (MESH:C084683), Sodium Phosphate (MESH:C018279), cytochalasin D (MESH:D015638), Nivo (MESH:D000077594), FA (MESH:C030544), MPB (MESH:C012415), GlutaMax (MESH:C054122), bicinchoninic acid (MESH:C047117), SDS (MESH:D012967), Trastuzumab (MESH:D000068878), Bevacizumab (MESH:D000068258), nitrogen (MESH:D009584), Val (MESH:D014633), chloroquine (MESH:D002738), imidazole (MESH:C029899), MG132 (MESH:C072553), Cetuximab (MESH:D000068818), H2O (MESH:D014867), NaCl (MESH:D012965), histidine (MESH:D006639), Bis-Tris (MESH:C026272), monensin (MESH:D008985), HEPES (MESH:D006531), 2-mercaptoethanol (MESH:D008623), Dynasore (MESH:C511794), CO2 (MESH:D002245), PBS (MESH:D007854), Acetic Acid (MESH:D019342), FITC (MESH:D016650), polyvinylidene difluoride (MESH:C024865), potassium phosphate (MESH:C013216), amiloride (MESH:D000584), sodium bicarbonate (MESH:D017693), EDTA (MESH:D004492), ethanol (MESH:D000431), streptomycin (MESH:D013307), phosphate (MESH:D010710), MMAE (MESH:C495575), Tween-20 (MESH:D011136), penicillin (MESH:D010406), Sodium Azide (MESH:D019810), Triton X (MESH:D017830), Rit (MESH:D000069283), pHrodo red (MESH:C000622037)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** C with 5, N297G, Y407V, K392L, T366L, T394W, T350V, L368A
- **Cell lines:** FaDu — Homo sapiens (Human), Hypopharyngeal squamous cell carcinoma, Cancer cell line (CVCL_1218), Daudi — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_0008), HEK — Homo sapiens (Human), Transformed cell line (CVCL_0045), Expi293 — Homo sapiens (Human), Transformed cell line (CVCL_D615), Ramos — Homo sapiens (Human), Burkitt lymphoma, Cancer cell line (CVCL_0597), SiHa — Homo sapiens (Human), Human papillomavirus-related cervical squamous cell carcinoma, Cancer cell line (CVCL_0032), MDA-MB-361 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0620), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), Jurkat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_0065)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12846780/full.md

## References

72 references — full list in the complete paper: https://tomesphere.com/paper/PMC12846780/full.md

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Source: https://tomesphere.com/paper/PMC12846780