# HIV-1 Nef Uses a Conserved Pocket to Recruit the N-Terminal Cytoplasmic Tail of Serinc3

**Authors:** Mohammad Karimian Shamsabadi, Charlotte Stoneham, Amalia De Leon, Tony Fares, John Guatelli, Xiaofei Jia

PMC · DOI: 10.3390/v18010005 · Viruses · 2025-12-19

## TL;DR

This study reveals how HIV-1 Nef protein recruits Serinc3 to block its antiviral activity, offering insights into potential drug targets.

## Contribution

The study identifies a conserved Nef pocket involved in Serinc3 recruitment and links it to CD4 downregulation, suggesting a shared mechanism.

## Key findings

- Nef binds to the N-terminal cytosolic tail of Serinc3 to recruit it.
- Key Nef residues for Serinc3 binding overlap with those for CD4 downregulation.
- The conserved Nef pocket is a potential target for antiretroviral drugs.

## Abstract

Human transmembrane proteins Serinc3 and Serinc5 are antiviral restriction factors that inhibit HIV-1 infectivity. In the absence of viral antagonism, Serinc3 and Serinc5 incorporate into the envelopes of nascent virions and inhibit the fusion of virions to the target cells. The HIV-1 virus counteracts the restriction of Serinc3 by downregulating it from the cell surface and thus excluding it from budding virions. This is orchestrated by the viral accessory protein Nef and involves hijacking of the clathrin adaptor protein complex 2 (AP2)-dependent endocytosis. The mechanistic details of Nef-mediated Serinc3 downregulation, however, have been enigmatic. In this work, we investigated and revealed the molecular determinants of Serinc3 modulation by Nef. Our results show that Nef recruits Serinc3 by binding to its N-terminal cytosolic tail. Furthermore, Nef residues important for Serinc3-binding in vitro, and for the exclusion of Serinc3 from virions, overlap with those required for Nef-mediated CD4 downregulation, suggesting great mechanistic similarities between the two functions of Nef. In addition to shedding light on the mechanism of Serinc3 antagonism, our work also highlights the conserved substrate-binding pocket of Nef as a molecular hotspot for inhibitor development and antiretroviral drug discovery.

## Linked entities

- **Genes:** SERINC3 (serine incorporator 3) [NCBI Gene 10955], SERINC5 (serine incorporator 5) [NCBI Gene 256987], S100B (S100 calcium binding protein B) [NCBI Gene 6285], CD4 (CD4 molecule) [NCBI Gene 920]
- **Proteins:** SERINC3 (serine incorporator 3), SERINC5 (serine incorporator 5), S100B (S100 calcium binding protein B), FABP4 (fatty acid binding protein 4), CD4 (CD4 molecule)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** SERINC5 (serine incorporator 5) [NCBI Gene 256987] {aka C5orf12, TPO1}, Nef [NCBI Gene 156110], SERINC3 (serine incorporator 3) [NCBI Gene 10955] {aka AIGP1, DIFF33, SBBI99, TDE, TDE1, TMS-1}, TFAP2A (transcription factor AP-2 alpha) [NCBI Gene 7020] {aka AP-2, AP-2alpha, AP2TF, BOFS, TFAP2}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}
- **Species:** Human immunodeficiency virus 1 (no rank) [taxon 11676], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12846431/full.md

## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC12846431/full.md

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Source: https://tomesphere.com/paper/PMC12846431