# In Silico Hazard Assessment of Ototoxicants Through Machine Learning and Computational Systems Biology

**Authors:** Shu Luan, Chao Ji, Gregory M. Zarus, Christopher M. Reh, Patricia Ruiz

PMC · DOI: 10.3390/toxics14010082 · Toxics · 2026-01-16

## TL;DR

This study uses computational models to identify chemicals that may cause hearing loss, focusing on predicting ototoxicity through machine learning and biological pathways.

## Contribution

The novel approach integrates machine learning and systems biology to screen and prioritize environmental chemicals for ototoxic risk.

## Key findings

- A computational model with high accuracy identified 18 potential ototoxicants from 76 chemicals.
- Mitotane and PCB 177 were predicted to disrupt thyroid-stimulating hormone receptor signaling, suggesting a shared ototoxic mechanism.
- Overlap in ototoxic pathways includes metabolic, cellular, and inflammatory processes.

## Abstract

Individuals across their lifespan may experience hearing loss from medications or chemicals, prompting concern about ototoxic environmental exposures. This study applies computational modeling as a screening-level hazard identification and chemical prioritization approach and is not intended to constitute a human health risk assessment or to estimate exposure- or dose-dependent ototoxic risk. We evaluated in silico drug-induced ototoxicity models on 80 environmental chemicals, excluding 4 with known ototoxicity, and analyzed 76 chemicals using fingerprinting, similarity assessment, and machine learning classification. We compared predicted environmental ototoxicants with ototoxic drugs, paired select polychlorinated biphenyls with the antineoplastic drug mitotane, and used PCB 177 as a case study to construct an ototoxicity pathway. A systems biology framework predicted and compared molecular targets of mitotane and PCB 177 to generate a network-level mechanism. The consensus model (accuracy 0.95 test; 0.90 validation) identified 18 of 76 chemicals as potential ototoxicants within acceptable confidence ranges. Mitotane and PCB 177 were both predicted to disrupt thyroid-stimulating hormone receptor signaling, suggesting thyroid-mediated pathways may contribute to auditory harm; additional targets included AhR, transthyretin, and PXR. Findings indicate overlapping mechanisms involving metabolic, cellular, and inflammatory processes. This work shows that integrated computational modeling can support virtual screening and prioritization for chemical and drug ototoxicity risk assessment.

## Linked entities

- **Proteins:** AHR (aryl hydrocarbon receptor), NR1I2 (nuclear receptor subfamily 1 group I member 2)
- **Chemicals:** mitotane (PubChem CID 4211), PCB 177 (PubChem CID 40477)

## Full-text entities

- **Genes:** TTR (transthyretin) [NCBI Gene 7276] {aka AMYLD1, ATTR, CTS, CTS1, HEL111, HsT2651}, TSHR (thyroid stimulating hormone receptor) [NCBI Gene 7253] {aka CHNG1, LGR3, hTSHR-I}, NR1I2 (nuclear receptor subfamily 1 group I member 2) [NCBI Gene 8856] {aka BXR, ONR1, PAR, PAR1, PAR2, PARq}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}
- **Diseases:** inflammatory (MESH:D007249), hearing loss (MESH:D034381), auditory harm (MESH:D006311)
- **Chemicals:** polychlorinated biphenyls (MESH:D011078), Mitotane (MESH:D008939), PCB 177 (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12845763/full.md

## References

74 references — full list in the complete paper: https://tomesphere.com/paper/PMC12845763/full.md

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Source: https://tomesphere.com/paper/PMC12845763