# Gedunin Impacts Pancreatic Cancer Stem Cells Through the Sonic Hedgehog Signaling Pathway

**Authors:** Karla Perez, Sheryl Rodriguez, Jose Barragan, Poornimadevi Narayanan, Alberto Ruiseco, Preetha Rajkumar, Nallely Ramirez, Victor Vasquez, Rajkumar Lakshmanaswamy, Ramadevi Subramani

PMC · DOI: 10.3390/ph19010019 · 2025-12-22

## TL;DR

Gedunin, a compound from neem, may help treat pancreatic cancer by targeting cancer stem cells and reducing tumor growth and spread.

## Contribution

This study is the first to demonstrate that Gedunin targets pancreatic cancer stem cells via the Sonic Hedgehog signaling pathway.

## Key findings

- Gedunin reduced tumor growth and cancer stem cell populations in xenograft models.
- Gedunin downregulated key stem cell and metastasis markers like Gli1, Shh, SOX2, and MMPs.
- Gedunin treatment decreased micrometastases in the lung, liver, and brain.

## Abstract

Background/Objectives: Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive cancer with a high rate of recurrence and a dismal prognosis. Studies have shown that pancreatic cancer stem cells (PCSCs) are a subpopulation that contributes to tumor progression, resistance to therapeutics, and metastasis, making them a key subpopulation to target for treatment. Gedunin (GD), a natural compound derived from Azadirachta indica (neem), has shown anticancer properties in pancreatic cancer cells, but its effects on PCSCs remains unclear. This study evaluated the effects of GD in pancreatic cancer stem cells, highlighting its impacts on tumor growth and progression and focusing on its impact on the sonic hedgehog (Shh) signaling pathway. Methods: Functional assays were performed to assess the effect of GD on the sphere-forming ability, colony formation, and self-renewal of PCSCs. Athymic mice xenograft models were utilized to evaluate the tumor suppression effect of GD in vivo. Furthermore, the anticancer effect of GD on PCSCs was assessed using both in vitro and in vivo limiting dilution assay. GD-induced changes in Shh signaling and key stem cell marker expressions in PCSCs were evaluated. Results: GD effectively inhibited tumor growth in xenograft models and reduced the percentage of PCSCs. GD was effective in decreasing PCSCs’ proliferative, self-renewal, and colony-forming capacity. GD decreased the protein expression levels of key Shh signaling markers Gli1 and Shh, stem cell markers SOX2, Nanog, and Oct4, metastasis-related proteins MMP-2, MMP-3, and MMP-9, and EMT markers Tgf1, Slug, Snail, and Twist in both PDAC cells and PCSCs. We demonstrated a significant decrease in the spheroid formation and self-renewal capacity of the (ALDH+) PCSC population following GD treatment in HPAC cells, indicating its potential antagonistic effects on PCSCs. GD was highly effective in reducing tumor volume, stemness, and metastasis in both early and late chemotherapy. In vivo limiting dilution assay using CD133+/LGR5+ PCSC xenografts demonstrated that GD reduces tumor growth, metastasis, and stemness associated with PCSCs by downregulating the expression of Shh and Gli1. GD treatment also reduced micrometastatic lesions in the lung, liver, and brain, as identified using H&E staining. Conclusions: The findings highlight GD’s potential as a promising therapeutic candidate for PDAC, with the ability to target both bulk tumor cells and PCSCs. By simultaneously suppressing tumor growth, stemness, and metastatic spread, GD may contribute to more effective treatment strategies and improved patient outcomes.

## Linked entities

- **Genes:** GLI1 (GLI family zinc finger 1) [NCBI Gene 2735], SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469], SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657], NANOG (Nanog homeobox) [NCBI Gene 79923], POU5F1 (POU class 5 homeobox 1) [NCBI Gene 5460], MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313], MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314], MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318], SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591], SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615], TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291]
- **Proteins:** GLI1 (GLI family zinc finger 1), SHH (sonic hedgehog signaling molecule), SOX2 (SRY-box transcription factor 2), NANOG (Nanog homeobox), POU5F1 (POU class 5 homeobox 1), MMP2 (matrix metallopeptidase 2), MMP3 (matrix metallopeptidase 3), MMP9 (matrix metallopeptidase 9), SNAI2 (snail family transcriptional repressor 2), SNAI1 (snail family transcriptional repressor 1), TWIST1 (twist family bHLH transcription factor 1)
- **Chemicals:** Gedunin (PubChem CID 12004512)
- **Diseases:** pancreatic ductal adenocarcinoma (MONDO:0005184), pancreatic cancer (MONDO:0005192)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591] {aka SLUG, SLUGH, SLUGH1, SNAIL2, WS2D}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}, MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314] {aka CHDS6, MMP-3, SL-1, STMY, STMY1, STR1}, NANOG (Nanog homeobox) [NCBI Gene 79923], SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469] {aka HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC}, POU5F1 (POU class 5 homeobox 1) [NCBI Gene 5460] {aka OCT3, OCT4, OCT4Borf1, OTF-3, OTF3, OTF4}, SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549] {aka FEX, GPR49, GPR67, GRP49, HG38}, GLI1 (GLI family zinc finger 1) [NCBI Gene 2735] {aka GLI, PAPA8, PPD1}, PROM1 (prominin 1) [NCBI Gene 8842] {aka AC133, CD133, CORD12, MCDR2, MSTP061, PROML1}, TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291] {aka ACS3, BPES2, BPES3, CRS, CRS1, CSO}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}
- **Diseases:** metastasis (MESH:D009362), PDAC (MESH:D021441), Pancreatic Cancer (MESH:D010190), cancer (MESH:D009369)
- **Chemicals:** H&amp;E (MESH:D006371), GD (MESH:C106014)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12844995/full.md

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Source: https://tomesphere.com/paper/PMC12844995