# Carvacrol Selectively Induces Mitochondria-Related Apoptotic Signaling in Primary Breast Cancer-Associated Fibroblasts

**Authors:** Nail Besli, Nilufer Ercin, Merve Tokocin, Sümeyra Emine Boluk, Rabia Kalkan Cakmak, Kamil Ozdogan, Talar Vartanoglu Aktokmakyan, Mehtap Toprak, Gulcin Ercan, Merve Beker, Ulkan Celik, Emir Capkinoglu, Yusuf Tutar

PMC · DOI: 10.3390/ph19010142 · 2026-01-14

## TL;DR

Carvacrol, a natural compound, selectively triggers cell death in breast cancer-associated fibroblasts without harming normal fibroblasts, suggesting potential as a cancer therapy.

## Contribution

This study demonstrates carvacrol's selective apoptotic effect on cancer-associated fibroblasts via mitochondria-related signaling.

## Key findings

- Carvacrol induces apoptosis in breast cancer-associated fibroblasts but not in normal fibroblasts.
- Carvacrol modulates PPARα/NF-κB, sirtuin, and autophagy pathways in cancer-associated fibroblasts.
- Molecular docking suggests carvacrol interacts with caspase-3 and caspase-9, supporting apoptosis.

## Abstract

Background/Objectives: Cancer-associated fibroblasts (CAFs) are key stromal mediators of breast tumor progression and therapy resistance. Carvacrol, a dietary monoterpenic phenol, exhibits antiproliferative activity in cancer cells, but its effects on primary human breast CAFs remain unclear. This study aimed to determine whether carvacrol selectively induces mitochondria-related apoptotic signaling in breast CAFs while sparing normal fibroblasts (NFs). Methods: Primary fibroblast cultures were established from invasive ductal carcinoma tissues (CAFs, n = 9) and nonmalignant breast tissues (NFs, n = 5) and validated by α-SMA and FAP immunofluorescence. Cells were exposed to 400 μM carvacrol. Apoptosis was assessed by TUNEL assay and BAX/BCL-XL Western blotting. Changes in signaling pathways were evaluated by analyzing PPARα/NF-κB, sirtuin (SIRT1, SIRT3), autophagy-related markers (LAMP2A, p62), and matrix metalloproteinases (MMP-2, MMP-3). In silico molecular docking and 100-ns molecular dynamics simulations were performed to examine interactions between carvacrol and caspase-3 and caspase-9. Results: Carvacrol induced a pronounced, time-dependent apoptotic response in CAFs, with TUNEL-based viability declining to approximately 10% of control levels by 12 h and a marked increase in the BAX/BCL-XL ratio. In contrast, NFs exhibited minimal TUNEL positivity and no significant change in BAX/BCL-XL. In CAFs, but not NFs, carvacrol reduced PPARα expression and NF-κB nuclear localization, increased SIRT1 and SIRT3 levels, selectively suppressed MMP-3 while partially normalizing MMP-2, and altered autophagy-related markers (decreased LAMP2A and accumulation of p62), consistent with autophagic stress and possible impairment of autophagic flux. Computational analyses revealed stable carvacrol binding to caspase-3 and caspase-9 with modest stabilization of active-site loops, supporting caspase-dependent, mitochondria-related apoptosis. Conclusions: Carvacrol selectively targets breast cancer-associated fibroblasts by inducing mitochondria-related apoptotic signaling while largely sparing normal fibroblasts. This effect is accompanied by coordinated modulation of PPARα/NF-κB, sirtuin, autophagy, and MMP pathways. These findings support further evaluation of carvacrol as a microenvironment-directed adjunct in breast cancer therapy.

## Linked entities

- **Genes:** ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58], FAP (fibroblast activation protein alpha) [NCBI Gene 2191], BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581], Bcl2l1 (BCL2-like 1) [NCBI Gene 12048], PPARA (peroxisome proliferator activated receptor alpha) [NCBI Gene 5465], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], SIRT1 (sirtuin 1) [NCBI Gene 23411], SIRT3 (sirtuin 3) [NCBI Gene 23410], Lamp2 (lysosomal-associated membrane protein 2) [NCBI Gene 16784], GTF2H1 (general transcription factor IIH subunit 1) [NCBI Gene 2965], MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313], MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314], Casp3 (caspase 3) [NCBI Gene 12367], Casp9 (caspase 9) [NCBI Gene 12371]
- **Chemicals:** carvacrol (PubChem CID 10364)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** FAP (fibroblast activation protein alpha) [NCBI Gene 2191] {aka DPPIV, FAPA, FAPalpha, SIMP}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, BCL2L1 (BCL2 like 1) [NCBI Gene 598] {aka BCL-XL/S, BCL2L, BCLX, Bcl-X, PPP1R52}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, PPARA (peroxisome proliferator activated receptor alpha) [NCBI Gene 5465] {aka NR1C1, PPAR, PPAR-alpha, PPARalpha, hPPAR}, CASP9 (caspase 9) [NCBI Gene 842] {aka APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56}, SIRT3 (sirtuin 3) [NCBI Gene 23410] {aka SIR2L3}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314] {aka CHDS6, MMP-3, SL-1, STMY, STMY1, STR1}
- **Diseases:** Cancer (MESH:D009369), ductal carcinoma (MESH:D044584), Breast Cancer (MESH:D001943)
- **Chemicals:** Carvacrol (MESH:C073316), monoterpenic phenol (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12844703/full.md

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Source: https://tomesphere.com/paper/PMC12844703